Back to the "Multiple platform build/check report"

Package 46/83HostnameOS / ArchBUILDCHECKBUILD BIN
hgu133plus2frmavecs 1.0.0
Matthew N. McCall
Snapshot Date: 2010-09-24 00:28:34 -0700 (Fri, 24 Sep 2010)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hgu133plus2frmavecs
Last Changed Rev: 1230 / Revision: 1309
Last Changed Date: 2010-06-08 11:15:20 -0700 (Tue, 08 Jun 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ ERROR ] OK 

Summary

Package: hgu133plus2frmavecs
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings hgu133plus2frmavecs_1.0.0.tar.gz
StartedAt: 2010-09-24 03:40:34 -0700 (Fri, 24 Sep 2010)
EndedAt: 2010-09-24 03:41:36 -0700 (Fri, 24 Sep 2010)
EllapsedTime: 61.6 seconds
RetCode: 1
Status:  ERROR 
CheckDir: hgu133plus2frmavecs.Rcheck
Warnings: NA

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-data-experiment/meat/hgu133plus2frmavecs.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'hgu133plus2frmavecs/DESCRIPTION' ... OK
* this is package 'hgu133plus2frmavecs' version '1.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hgu133plus2frmavecs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... ERROR
Running examples in 'hgu133plus2frmavecs-Ex.R' failed.
The error most likely occurred in:

> ### * hgu133plus2frmavecs
> 
> flush(stderr()); flush(stdout())
> 
> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hgu133plus2frmavecs
> ### Title: Vectors used by fRMA for hgu133plus2.
> ### Aliases: hgu133plus2frmavecs
> ### Keywords: datasets
> 
> ### ** Examples
> 
>   str(hgu133plus2frmavecs)
Error in str(hgu133plus2frmavecs) : 
  object 'hgu133plus2frmavecs' not found
Execution halted

hgu133plus2frmavecs.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘hgu133plus2frmavecs’ ...
** data
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (hgu133plus2frmavecs)

hgu133plus2frmavecs.Rcheck/hgu133plus2frmavecs-Ex.timings:

nameusersystemelapsed