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Package 9/83HostnameOS / ArchBUILDCHECKBUILD BIN
ccTutorial 1.0.17
Joern Toedling
Snapshot Date: 2010-09-24 00:28:34 -0700 (Fri, 24 Sep 2010)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ccTutorial
Last Changed Rev: 1044 / Revision: 1309
Last Changed Date: 2009-10-13 18:55:23 -0700 (Tue, 13 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ccTutorial
Version: 1.0.17
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings ccTutorial_1.0.17.tar.gz
StartedAt: 2010-09-24 03:40:59 -0700 (Fri, 24 Sep 2010)
EndedAt: 2010-09-24 03:50:46 -0700 (Fri, 24 Sep 2010)
EllapsedTime: 586.7 seconds
RetCode: 0
Status:  OK  
CheckDir: ccTutorial.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-data-experiment/meat/ccTutorial.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ccTutorial/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ccTutorial' version '1.0.17'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ccTutorial' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

ccTutorial.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'ccTutorial' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: limma
Loading required package: Matrix
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

Loading required package: grid

Attaching package: 'affy'

The following object(s) are masked from 'package:Ringo':

    probes

Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: SparseM
Package SparseM (0.86) loaded.
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

    backsolve


groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ccTutorial)

ccTutorial.Rcheck/ccTutorial-Ex.timings:

nameusersystemelapsed
X23.52 0.1824.06
arrayGenesToProbeSets0.040.000.12
barreraExpressionX0.180.000.25
chersX0.960.021.02
mm9g2p1.890.031.95
mm9gene2GO0.050.000.10
mm9genes0.110.020.13
probeAnno000