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Package 241/389HostnameOS / ArchBUILDCHECKBUILD BIN
methVisual 1.0.1
Arie Zackay
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/methVisual
Last Changed Rev: 46939 / Revision: 49923
Last Changed Date: 2010-05-18 09:50:11 -0700 (Tue, 18 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: methVisual
Version: 1.0.1
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings methVisual_1.0.1.tar.gz
StartedAt: 2010-10-04 19:09:04 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:10:56 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 112.1 seconds
RetCode: 0
Status:  OK  
CheckDir: methVisual.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/methVisual.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'methVisual/DESCRIPTION' ... OK
* this is package 'methVisual' version '1.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'methVisual' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

methVisual.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'methVisual' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

Loading required package: proto
Loading required package: DBI
Loading required package: RSQLite
Loading required package: RSQLite.extfuns
Loading required package: chron
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (methVisual)

methVisual.Rcheck/methVisual-Ex.timings:

nameusersystemelapsed
Cooccurrence0.550.000.55
MethAlignNW2.750.053.10
MethDataInput0.030.030.07
MethLollipops0.030.000.03
MethylQC2.310.062.60
cgInAlign000
cgMethFinder0.020.000.01
coversionGenom000
findNonAligned0.010.000.02
heatMapMeth0.100.000.14
makeDataMethGFF0.420.030.48
makeLocalExpDir0.060.020.08
makeTabFilePath0.000.000.06
matrixSNP0.350.000.35
methCA0.000.010.03
methData0.000.020.01
methFisherTest0.030.010.05
methWhitneyUTest0.000.020.01
plotAbsMethyl0.000.010.02
plotMatrixSNP0.700.020.73
readBisulfFASTA0.060.020.13
selectRefSeq0.030.030.09