Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 228/389HostnameOS / ArchBUILDCHECKBUILD BIN
marray 1.26.0
Yee Hwa (Jean) Yang
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/marray
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: marray
Version: 1.26.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings marray_1.26.0.tar.gz
StartedAt: 2010-10-04 17:45:32 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:47:34 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 122.1 seconds
RetCode: 0
Status:  OK 
CheckDir: marray.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/marray.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'marray/DESCRIPTION' ... OK
* this is package 'marray' version '1.26.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'marray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findID: no visible binding for global variable ‘gnames’
findID: no visible global function definition for ‘phenoData’
htmlPage: no visible binding for global variable ‘Gnames’
maTwoSamples: no visible global function definition for ‘gpTools’
scale.na: no visible global function definition for ‘applyy’
widget.TwoSamples: no visible global function definition for
  ‘widgetRender’
widget.mapGeneInfo: no visible global function definition for
  ‘widgetRender’
* checking Rd files ... NOTE
prepare_Rd: cbind.Rd:35-36: Dropping empty section \value
prepare_Rd: cbind.Rd:41-42: Dropping empty section \examples
prepare_Rd: maCompLayout.Rd:19-21: Dropping empty section \details
prepare_Rd: read.marrayInfo.Rd:30-32: Dropping empty section \details
prepare_Rd: read.marrayLayout.Rd:35: Dropping empty section \details
prepare_Rd: read.marrayLayout.Rd:42: Dropping empty section \note
prepare_Rd: read.marrayRaw.Rd:73-75: Dropping empty section \details
prepare_Rd: showLargeObject.Rd:26-27: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

marray.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘marray’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (marray)

marray.Rcheck/marray-Ex.timings:

nameusersystemelapsed
boxplot0.8430.1921.041
checkTargetInfo0.1830.0310.215
dim0.0040.0000.005
findID0.1660.0210.192
htmlPage0.2580.0450.316
image0.0900.0050.096
ma2D000
maBoxplot000
maColorBar0.0240.0010.025
maCompCoord0.0010.0010.002
maCompInd0.0100.0030.012
maCompLayout0.0140.0010.015
maCompNormA0.0010.0000.000
maCompPlate0.0160.0040.019
maCoord2Ind0.0050.0010.007
maDefaultPar0.0000.0000.001
maDotsDefaults0.0020.0000.002
maDotsMatch0.0020.0000.003
maGenControls0.3770.0210.400
maGeneTable0.1460.0150.163
maImage1.3850.3321.742
maImage.func000
maInd2Coord0.0060.0010.008
maLegendLines000
maLoess000
maLoessLines0.0000.0010.000
maMAD0.0010.0000.001
maMed000
maNorm4.3440.2884.665
maNorm2D000
maNormLoess0.0010.0000.000
maNormMAD0.0000.0000.001
maNormMain27.575 1.08728.921
maNormMed000
maNormScale0.5600.2150.786
maNum2Logic000
maPalette0.0150.0010.016
maPlot4.3820.3504.828
maPlot.func000
maSelectGnames0.0150.0010.016
maText000
maTop0.0000.0010.001
mapGeneInfo0.0010.0000.002
marrayInfo-class0.0000.0010.000
marrayLayout-class0.0010.0000.000
marrayNorm-class0.5820.1960.804
marrayRaw-class0.2520.0540.313
opVersionID0.0020.0000.002
plotMA4.0330.2624.475
read.Galfile0.2120.0210.241
read.marrayInfo0.1050.0090.116
read.marrayLayout0.1950.0190.215
read.marrayRaw3.6930.2624.283
rm.na0.0010.0010.001
stat.confband.text1.1460.0821.240
stat.gnames0.6810.0610.754
write.list0.2690.0670.339
write.marray0.1360.0210.158
write.xls0.1550.0390.195