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Package 202/389HostnameOS / ArchBUILDCHECKBUILD BIN
iterativeBMAsurv 1.6.0
Ka Yee Yeung
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/iterativeBMAsurv
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: iterativeBMAsurv
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings iterativeBMAsurv_1.6.0.tar.gz
StartedAt: 2010-10-04 17:32:24 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:34:33 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 128.9 seconds
RetCode: 0
Status:  OK 
CheckDir: iterativeBMAsurv.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/iterativeBMAsurv.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'iterativeBMAsurv/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iterativeBMAsurv' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'iterativeBMAsurv' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: predictBicSurv.Rd:46: Dropping empty section \note
prepare_Rd: predictiveAssessCategory.Rd:52: Dropping empty section \note
prepare_Rd: printTopGenes.Rd:49: Dropping empty section \note
prepare_Rd: singleGeneCoxph.Rd:54: Dropping empty section \note
prepare_Rd: testCens.Rd:13-14: Dropping empty section \details
prepare_Rd: testSurv.Rd:13-14: Dropping empty section \details
prepare_Rd: trainCens.Rd:13-14: Dropping empty section \details
prepare_Rd: trainSurv.Rd:13-14: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

iterativeBMAsurv.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘iterativeBMAsurv’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: survival
Loading required package: splines
Loading required package: leaps
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (iterativeBMAsurv)

iterativeBMAsurv.Rcheck/iterativeBMAsurv-Ex.timings:

nameusersystemelapsed
crossVal3.5640.0423.856
imageplot.iterate.bma.surv28.622 0.12729.135
iterateBMAsurv.train14.905 0.07315.149
iterateBMAsurv.train.predict.assess1.6740.0211.715
iterateBMAsurv.train.wrapper14.620 0.05514.770
iterativeBMAsurv-package5.1410.0515.309
predictBicSurv14.915 0.06915.060
predictiveAssessCategory15.703 0.08715.870
printTopGenes0.6250.0030.632
singleGeneCoxph0.6340.0030.653