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Package 177/389HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.26.0
Seth Falcon
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/graph
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: graph
Version: 1.26.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings graph_1.26.0.tar.gz
StartedAt: 2010-10-04 17:24:06 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:25:30 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 84.4 seconds
RetCode: 0
Status:  OK 
CheckDir: graph.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/graph.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.26.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
  Running ‘graph_unit_tests.R’
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

graph.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘graph’ ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
mv graph.so BioC_graph.so
installing to /Users/biocbuild/bbs-2.6-bioc/meat/graph.Rcheck/graph/libs/i386
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
mv graph.so BioC_graph.so
installing to /Users/biocbuild/bbs-2.6-bioc/meat/graph.Rcheck/graph/libs/ppc
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
mv graph.so BioC_graph.so
installing to /Users/biocbuild/bbs-2.6-bioc/meat/graph.Rcheck/graph/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.0820.0010.085
IMCA0.4500.0130.482
MAPKsig0.1940.0110.292
MultiGraph-class0.0770.0020.080
acc-methods0.0270.0010.029
addEdge0.0290.0010.030
addNode0.0260.0000.028
adj-methods0.0110.0000.011
apoptosisGraph0.0740.0030.082
attrData-class0.0030.0010.003
aveNumEdges0.0270.0000.027
biocRepos0.0030.0000.004
boundary0.0180.0000.019
buildRepDepGraph0.0000.0000.001
calcProb0.0010.0000.000
calcSumProb0.020.000.02
clearNode0.0130.0010.016
clusterGraph-class0.0100.0000.011
clusteringCoefficient-methods0.0220.0000.023
combineNodes0.0940.0010.095
distGraph-class0.0020.0000.002
duplicatedEdges0.0010.0000.001
edgeMatrix0.0310.0010.033
edgeWeights0.0530.0010.054
fromGXL-methods0.4690.0160.486
graph-class0.0180.0020.020
graph2SparseM0.4000.0100.417
graphAM-class0.0270.0010.029
graphBAM-class0.1020.0010.104
graphExamples0.0110.0010.012
graphNEL-class0.0120.0010.012
inEdges0.0090.0010.010
leaves0.0250.0010.027
listEdges0.0240.0010.026
matrix2Graph0.0470.0010.048
mostEdges0.0420.0010.043
numNoEdges0.0100.0010.011
pancrCaIni0.1670.0040.182
randomEGraph0.0180.0000.019
randomGraph0.0170.0000.017
randomNodeGraph0.0130.0010.014
removeEdge0.0310.0010.031
removeNode0.010.000.01
renderInfo-class0.0260.0000.027
reverseEdgeDirections0.0150.0000.015
simpleEdge-class0.0030.0010.003
standardLabeling0.0820.0110.093
subGraph0.0030.0000.003
toDotR-methods0.0490.0060.055
ugraph0.0200.0010.020
validGraph0.0050.0000.006