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Package 177/389HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.26.0
Seth Falcon
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/graph
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: graph
Version: 1.26.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings graph_1.26.0.tar.gz
StartedAt: 2010-10-04 18:36:08 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 18:37:32 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 83.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: graph.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/graph.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.26.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'src' contains:
  BioC_graph.dll
These are unlikely file names for src files.
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
  Running 'graph_unit_tests.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.6-bioc/meat/graph.Rcheck/00check.log
for details

graph.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'graph' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c graph.c -o graph.o
gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
mv graph.dll BioC_graph.dll
installing to E:/biocbld/bbs-2.6-bioc/meat/graph.Rcheck/graph/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.060.000.06
IMCA0.370.010.39
MAPKsig0.140.030.36
MultiGraph-class0.050.000.04
acc-methods0.020.000.01
addEdge0.010.000.02
addNode0.020.000.02
adj-methods0.010.000.01
apoptosisGraph0.070.040.10
attrData-class0.010.000.01
aveNumEdges0.020.000.02
biocRepos0.010.000.01
boundary0.020.000.02
buildRepDepGraph000
calcProb000
calcSumProb0.010.000.02
clearNode0.020.000.01
clusterGraph-class000
clusteringCoefficient-methods0.020.000.02
combineNodes0.060.000.06
distGraph-class000
duplicatedEdges000
edgeMatrix0.050.000.05
edgeWeights0.020.000.02
fromGXL-methods0.340.030.43
graph-class0.020.000.02
graph2SparseM0.260.030.30
graphAM-class0.020.000.02
graphBAM-class0.060.000.07
graphExamples0.000.010.26
graphNEL-class0.010.000.02
inEdges000
leaves0.040.000.04
listEdges0.010.000.02
matrix2Graph0.030.000.03
mostEdges0.020.000.01
numNoEdges000
pancrCaIni0.150.000.19
randomEGraph0.020.000.02
randomGraph000
randomNodeGraph000
removeEdge0.020.000.02
removeNode000
renderInfo-class000
reverseEdgeDirections0.020.000.02
simpleEdge-class000
standardLabeling0.080.000.08
subGraph000
toDotR-methods0.030.011.26
ugraph000
validGraph000