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Package 158/389HostnameOS / ArchBUILDCHECKBUILD BIN
genomes 1.4.0
Chris Stubben
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/genomes
Last Changed Rev: 48051 / Revision: 49923
Last Changed Date: 2010-07-09 16:15:59 -0700 (Fri, 09 Jul 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: genomes
Version: 1.4.0
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings genomes_1.4.0.tar.gz
StartedAt: 2010-10-04 17:45:52 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:46:34 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 42.6 seconds
RetCode: 0
Status:  OK 
CheckDir: genomes.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/genomes.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'genomes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genomes' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'genomes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

genomes.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'genomes' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genomes)

genomes.Rcheck/genomes-Ex.timings:

nameusersystemelapsed
doublingTime0.1520.0000.152
genomes-lines0.1600.0080.170
genomes-plot0.1000.0040.103
genomes-print0.1360.0000.139
genomes-subset0.0680.0000.069
genomes-summary0.0200.0040.021
genomes-update0.0000.0000.003
genomes0.1760.0000.177
genus0.2000.0000.197
gold1.3240.0241.347
hmp0.0600.0080.071
lenvs0.0240.0000.025
leuks0.1440.0040.145
like0.0840.0000.082
lproks0.2680.0000.273
plotby0.2160.0200.237
species0.3520.0000.352
table20.0120.0000.013
taxid2names0.0080.0040.715
term2neighbor0.0560.0001.288
term2summary1.1400.0245.272
top0.2120.0080.221
virus0.0920.0000.887
wgs0.1040.0000.106