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Package 123/389HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.14.1
F. Hahne
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/flowCore
Last Changed Rev: 46647 / Revision: 49923
Last Changed Date: 2010-04-30 12:30:16 -0700 (Fri, 30 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: flowCore
Version: 1.14.1
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings flowCore_1.14.1.tar.gz
StartedAt: 2010-10-04 17:18:17 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:21:02 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 164.8 seconds
RetCode: 0
Status:  OK 
CheckDir: flowCore.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/flowCore.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowCore/DESCRIPTION' ... OK
* this is package 'flowCore' version '1.14.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

flowCore.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'flowCore' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c biexponential.c -o biexponential.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c inPolygon.c -o inPolygon.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c inPolytope.c -o inPolytope.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o flowCore.so biexponential.o inPolygon.o inPolytope.o init.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.6-bioc/meat/flowCore.Rcheck/flowCore/libs
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (flowCore)

flowCore.Rcheck/flowCore-Ex.timings:

nameusersystemelapsed
EHtrans-class0.2080.0120.220
Subset-methods1.6280.0081.638
actionItem-class0.0000.0000.001
arcsinhTransform0.2040.0000.201
asinht-class0.0600.0040.063
biexponentialTransform11.649 0.25611.905
boundaryFilter-class0.2240.0040.228
characterOrTransformation-class0.0000.0000.002
coerce0.2240.0080.232
compensateActionItem-class0.0000.0000.001
compensateView-class0.0040.0000.001
compensatedParameter-class0.3040.0000.305
compensation-class0.7320.0000.731
curv1Filter-class0.9960.0000.996
curv2Filter-class3.9240.0043.928
dg1polynomial-class0.0480.0040.052
each_col-methods0.0640.0000.063
ellipsoidGate0.1320.0000.132
exponential-class0.0480.0040.050
expressionFilter-class0.1320.0000.133
fcReference-class0.0040.0000.001
filter-methods1.2600.0041.265
filter-on-methods0.2600.0040.264
filterList-class0.0200.0000.019
filterResult-class0.0000.0000.001
filterResultList-class2.0520.0082.091
filterSet-class0.0960.0040.100
filterSummary-class0.6560.0000.656
filterSummaryList-class1.8200.0041.826
flowFrame-class4.2330.0444.278
flowSet-class4.8920.0204.909
fsApply0.3200.0000.318
gateActionItem-class0.0000.0000.001
gateView-class0.0000.0000.001
hyperlog-class1.8680.0001.940
identifier-methods0.0440.0000.041
inverseLogicleTransform0.7680.0080.781
invsplitscale-class0.0480.0040.052
keyword-methods1.0000.0081.007
kmeansFilter0.3440.0000.343
linearTransform0.0800.0000.078
lnTransform4.0240.0164.041
logTransform0.2200.0040.225
logarithm-class0.0520.0000.051
logicalFilterResult-class0.0000.0000.001
logicleTransform0.7680.0120.783
manyFilterResult-class0.0000.0000.002
multipleFilterResult-class0.0040.0000.001
norm2Filter-class0.2690.0000.270
normalizeActionItem-class0.0000.0000.001
normalizeView-class0.0000.0000.001
parameters-methods0.0440.0000.047
polygonGate0.140.000.14
quadGate0.4640.0000.465
quadratic-class0.0520.0000.053
quadraticTransform0.0920.0000.092
ratio-class0.0600.0000.057
read.FCS0.1080.0000.107
read.FCSheader0.0040.0040.009
read.flowSet0.2320.0000.232
rectangleGate0.2640.0000.265
sampleFilter-class0.1200.0040.122
scaleTransform0.0920.0000.090
singleParameterTransform-class0.0000.0000.002
sinht-class0.0560.0000.055
split-methods1.8200.0121.832
splitScaleTransform3.4960.0083.502
splitscale-class0.2000.0040.201
squareroot-class0.0480.0000.050
subsettingActionItem-class0.0000.0000.001
subsettingView-class0.0000.0000.001
timeFilter-class2.5720.0122.584
transform-class0.0040.0000.003
transformActionItem-class0.0000.0000.001
transformFilter-class0.2200.0000.218
transformList-class0.7240.0040.725
transformMap-class0.0000.0000.001
transformView-class0.0040.0000.001
truncateTransform0.0800.0040.085
unitytransform-class0.0400.0040.044
view-class0.0000.0000.001
workFlow-class0.0040.0000.001
write.FCS0.0800.0000.081
write.flowSet1.1000.0321.130