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Package 28/389HostnameOS / ArchBUILDCHECKBUILD BIN
aroma.light 1.16.1
Henrik Bengtsson
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/aroma.light
Last Changed Rev: 48372 / Revision: 49923
Last Changed Date: 2010-07-23 06:03:37 -0700 (Fri, 23 Jul 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: aroma.light
Version: 1.16.1
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings aroma.light_1.16.1.tar.gz
StartedAt: 2010-10-04 16:43:29 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 16:45:14 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 105.1 seconds
RetCode: 0
Status:  OK  
CheckDir: aroma.light.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/aroma.light.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'aroma.light/DESCRIPTION' ... OK
* this is package 'aroma.light' version '1.16.1'
* package encoding: latin1
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'aroma.light' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

aroma.light.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'aroma.light' ...
** R
** inst
** preparing package for lazy loading
R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (aroma.light)

aroma.light.Rcheck/aroma.light-Ex.timings:

nameusersystemelapsed
backtransformAffine.matrix000
backtransformPrincipalCurve.matrix1.020.001.03
calibrateMultiscan.matrix000
callNaiveGenotypes.numeric0.610.010.63
distanceBetweenLines0.020.000.02
findPeaksAndValleys.numeric0.100.000.11
fitPrincipalCurve.matrix0.710.020.72
fitXYCurve.matrix0.080.000.08
iwpca.matrix0.010.000.02
likelihood.smooth.spline0.410.000.42
medianPolish.matrix0.010.000.02
normalizeAffine.matrix21.43 0.0121.43
normalizeCurveFit.matrix21.04 0.0421.14
normalizeDifferencesToAverage.list0.040.000.05
normalizeFragmentLength1.110.031.14
normalizeQuantileRank.list0.180.000.17
normalizeQuantileRank.matrix0.070.000.08
normalizeQuantileSpline.matrix2.470.032.52
normalizeTumorBoost.numeric0.190.010.21
robustSmoothSpline0.060.020.34
sampleCorrelations.matrix0.140.000.14
sampleTuples000
weightedMedian4.340.124.47
wpca.matrix0.080.000.09