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Package 306/389HostnameOS / ArchBUILDCHECKBUILD BIN
Rdisop 1.8.0
Steffen Neumann
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/Rdisop
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D

Summary

Package: Rdisop
Version: 1.8.0
Command: chmod a+r Rdisop -R && E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build Rdisop
StartedAt: 2010-10-04 14:45:16 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 14:45:58 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 42.5 seconds
RetCode: 0
Status:  OK  
PackageFile: Rdisop_1.8.0.tar.gz
PackageFileSize: 2.023 MiB

Command output

* checking for file 'Rdisop/DESCRIPTION' ... OK
* preparing 'Rdisop':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'Rdisop' ...
Building libRcpp.a in RcppSrc...
g++ -c Rcpp.cpp -o Rcpp.o -I"E:\biocbld\bbs-2.6-bioc\R/include" -I"E:\biocbld\bbs-2.6-bioc\R/src/include"  -Wall -O2
ar r libRcpp.a Rcpp.o
C:\Rtools211\MinGW\bin\ar.exe: creating libRcpp.a
ranlib libRcpp.a
rm Rcpp.o
Building imslib.dll in src/imslib...
cp src/winlibs/libims*.dll R_PACKAGE_DIR:E:/biocbld/bbs-2.6-bioc/tmpdir/Rinst377681719/Rdisop/libs/
-rw-r--r-- 1 biocbuild None 2806048 2010-04-22 11:50 src/winlibs/libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 2010-04-22 11:50 src/winlibs/libims.dll
libs in instal directory...
total 5488
-rwxr-xr-x 1 biocbuild None 2806048 2010-10-04 14:45 libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 2010-10-04 14:45 libims.dll
** libs
  making DLL ...
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include"      -I./imslib/src -I../RcppSrc/   -O2 -Wall  -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:124: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:211: warning: comparison between signed and unsigned integer expressions
disop.cpp:214: warning: comparison between signed and unsigned integer expressions
disop.cpp:222: warning: comparison between signed and unsigned integer expressions
disop.cpp:222: warning: comparison between signed and unsigned integer expressions
disop.cpp:174: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'SEXPREC* calculateScore(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:357: warning: comparison between signed and unsigned integer expressions
disop.cpp:357: warning: comparison between signed and unsigned integer expressions
disop.cpp:374: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp:381: warning: comparison between signed and unsigned integer expressions
disop.cpp:381: warning: comparison between signed and unsigned integer expressions
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&, int)':
disop.cpp:797: warning: deprecated conversion from string constant to 'char*'
disop.cpp:799: warning: deprecated conversion from string constant to 'char*'
disop.cpp:801: warning: deprecated conversion from string constant to 'char*'
disop.cpp:803: warning: deprecated conversion from string constant to 'char*'
disop.cpp:804: warning: deprecated conversion from string constant to 'char*'
disop.cpp:805: warning: deprecated conversion from string constant to 'char*'
g++ -shared -s -static-libgcc -o Rdisop.dll tmp.def disop.o -L./winlibs -lims -L../RcppSrc/ -lRcpp -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR       by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving ims::IsotopeDistribution::SIZE      by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-importc:/rtools211/mingw/bin/../lib/gcc/mingw32/4.2.1-sjlj/../../../../mingw32/bin/ld.exe: warning: auto-importing has been activated without --enable-auto-import specified on the command line.
This should work unless it involves constant data structures referencing symbols from auto-imported DLLs.)

installing to E:/biocbld/bbs-2.6-bioc/tmpdir/Rinst377681719/Rdisop/libs
  ... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Rdisop)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Rdisop_1.8.0.tar.gz'