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Package 230/389HostnameOS / ArchBUILDCHECKBUILD BIN
MassArray 1.0.0
Reid F. Thompson
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/MassArray
Last Changed Rev: 47438 / Revision: 49923
Last Changed Date: 2010-06-13 15:22:02 -0700 (Sun, 13 Jun 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MassArray
Version: 1.0.0
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings MassArray_1.0.0.tar.gz
StartedAt: 2010-10-04 18:34:21 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 18:35:19 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 57.8 seconds
RetCode: 0
Status:  OK 
CheckDir: MassArray.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/MassArray.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MassArray/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassArray' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

MassArray.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'MassArray' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MassArray)

MassArray.Rcheck/MassArray-Ex.timings:

nameusersystemelapsed
MassArray.example.data0.0120.0000.013
MassArrayData-class0.0040.0000.001
MassArrayFragment-class0.0040.0000.007
MassArrayPeak-class000
MassArraySpectrum-class0.0000.0000.001
ampliconPrediction2.4400.0082.447
analyzeCpGs0.2280.0000.228
bisConvert000
calcMW0.0040.0000.001
calcMeth0.0120.0000.013
calcPercentAdduct0.1080.0000.107
calcPercentConversion0.0400.0000.043
combine5.6240.0045.624
convControl0.0960.0000.098
countCGs0.0000.0000.001
createWiggle0.0080.0000.010
estimatePrimerDimer0.0720.0000.072
evaluateSNPs23.322 0.00023.335
expandSequence0.0000.0040.001
findCollisions000
findFragments0.0160.0000.015
findPeaks000
identifySNPs0.0240.0000.024
inSilicoFragmentation0.0080.0000.011
isAssayable000
numCollisions000
plot.MassArrayData0.0360.0000.035
position0.0160.0000.018
revComplement000
rnaDigest0.0040.0040.007
samples0.0280.0000.028
sum.MassArraySpectrum0.7240.0000.722