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Package 230/389HostnameOS / ArchBUILDCHECKBUILD BIN
MassArray 1.0.0
Reid F. Thompson
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/MassArray
Last Changed Rev: 47438 / Revision: 49923
Last Changed Date: 2010-06-13 15:22:02 -0700 (Sun, 13 Jun 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MassArray
Version: 1.0.0
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings MassArray_1.0.0.tar.gz
StartedAt: 2010-10-04 17:38:31 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:39:48 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 76.8 seconds
RetCode: 0
Status:  OK  
CheckDir: MassArray.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/MassArray.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MassArray/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassArray' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

MassArray.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'MassArray' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MassArray)

MassArray.Rcheck/MassArray-Ex.timings:

nameusersystemelapsed
MassArray.example.data0.020.010.03
MassArrayData-class000
MassArrayFragment-class000
MassArrayPeak-class0.020.000.01
MassArraySpectrum-class000
ampliconPrediction2.930.002.94
analyzeCpGs0.250.000.25
bisConvert000
calcMW000
calcMeth0.020.000.02
calcPercentAdduct0.120.000.12
calcPercentConversion0.050.000.05
combine6.160.006.16
convControl0.000.020.01
countCGs000
createWiggle000
estimatePrimerDimer0.110.000.11
evaluateSNPs28.47 0.0028.48
expandSequence000
findCollisions000
findFragments0.010.000.02
findPeaks000
identifySNPs0.030.000.03
inSilicoFragmentation0.020.000.01
isAssayable000
numCollisions000
plot.MassArrayData0.030.000.03
position0.030.000.04
revComplement000
rnaDigest000
samples0.030.000.03
sum.MassArraySpectrum0.770.000.76