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Package 226/389HostnameOS / ArchBUILDCHECKBUILD BIN
MANOR 1.20.0
Pierre Neuvial
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/MANOR
Last Changed Rev: 47149 / Revision: 49923
Last Changed Date: 2010-05-26 11:24:55 -0700 (Wed, 26 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MANOR
Version: 1.20.0
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD INSTALL --build --library=MANOR.buildbin-libdir MANOR_1.20.0.tar.gz
StartedAt: 2010-10-04 19:31:01 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:31:09 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 8.3 seconds
RetCode: 0
Status:  OK  
PackageFile: MANOR_1.20.0.zip
PackageFileSize: 1.185 MiB

Command output

* installing *source* package 'MANOR' ...

  Using auto-selected zip option '--use-zip-data'

** libs
  making DLL ...
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c Rnem_arg.c -o Rnem_arg.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c Rnem_exe.c -o Rnem_exe.o
Rnem_exe.c: In function 'MakeErrinfo':
Rnem_exe.c:216: warning: cast from pointer to integer of different size
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c exememo.c -o exememo.o
exememo.c: In function 'GenAlloc':
exememo.c:39: warning: format '%ld' expects type 'long int', but argument 5 has type 'size_t'
exememo.c:39: warning: format '%ld' expects type 'long int', but argument 6 has type 'size_t'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c lib_io.c -o lib_io.o
lib_io.c: In function 'CountLinesColumns':
lib_io.c:354: warning: 'mincols' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c nem_alg.c -o nem_alg.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c nem_hlp.c -o nem_hlp.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c nem_mod.c -o nem_mod.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c nem_nei.c -o nem_nei.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c nem_rnd.c -o nem_rnd.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c nem_ver.c -o nem_ver.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o MANOR.dll tmp.def Rnem_arg.o Rnem_exe.o exememo.o lib_io.o nem_alg.o nem_hlp.o nem_mod.o nem_nei.o nem_rnd.o nem_ver.o -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/MANOR.buildbin-libdir/MANOR/libs/x64
  ... done
** R
** data
** inst
** preparing package for lazy loading


######################################################################################



Have fun with GLAD



For smoothing it is possible to use either

the AWS algorithm (Polzehl and Spokoiny, 2002)

or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics,  2008)



If you use the package with AWS, please cite:

Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)



If you use the package with HaarSeg, please cite:

Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar, Bioinformatics, 2008)



For fast computation it is recommanded to use

the daglad function with smoothfunc=haarseg



######################################################################################



New options are available in daglad: see help for details.


** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MANOR' as MANOR_1.20.0.zip

* DONE (MANOR)