Harshlight 1.18.0
Maurizio Pellegrino
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/Harshlight | | Last Changed Rev: 46401 / Revision: 49923 | | Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/Harshlight.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Harshlight/DESCRIPTION' ... OK
* this is package 'Harshlight' version '1.18.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Harshlight' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Harshlight: no visible binding for global variable 'sim'
Harshlight: no visible binding for global variable 'sim.int'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'Harshlight' ...
** libs
making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c Harshlight.c -o Harshlight.o
Harshlight.c:157: warning: C99 inline functions are not supported; using GNU89
Harshlight.c:157: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
Harshlight.c: In function 'norm':
Harshlight.c:1316: warning: unused variable 'sorted2'
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1467: warning: unknown conversion type character ')' in format
Harshlight.c:1471: warning: unknown conversion type character ')' in format
Harshlight.c:1474: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532: warning: unknown conversion type character ')' in format
Harshlight.c:1542: warning: unknown conversion type character ')' in format
Harshlight.c:1543: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555: warning: unknown conversion type character ')' in format
gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/Harshlight.Rcheck/Harshlight/libs
... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: matchprobes
Loading required package: AnnotationDbi
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from 'package:Biobase':
updateObject
The following object(s) are masked from 'package:base':
Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
rbind, rep.int, table
*** Deprecation warning ***
The matchprobes package is deprecated and will not be supported
anymore starting with Bioconductor 2.4. Please switch to using the
Biostrings package for efficient string manipulations. If you need
to build a probe package, please see the makeProbePackage vignette
in the AnnotationDbi package.
Loading required package: makecdfenv
Loading required package: hypergraph
Loading required package: graph
Attaching package: 'graph'
The following object(s) are masked from 'package:Biostrings':
complement
Attaching package: 'hypergraph'
The following object(s) are masked from 'package:IRanges':
head, tail
The following object(s) are masked from 'package:AnnotationDbi':
head, tail
The following object(s) are masked from 'package:utils':
head, tail
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (Harshlight)