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Package 191/389HostnameOS / ArchBUILDCHECKBUILD BIN
HTqPCR 1.2.0
Heidi Dvinge
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/HTqPCR
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: HTqPCR
Version: 1.2.0
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings HTqPCR_1.2.0.tar.gz
StartedAt: 2010-10-04 17:18:14 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:19:32 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 78.9 seconds
RetCode: 0
Status:  OK  
CheckDir: HTqPCR.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/HTqPCR.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HTqPCR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HTqPCR' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HTqPCR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

HTqPCR.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'HTqPCR' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

HTqPCR.Rcheck/HTqPCR-Ex.timings:

nameusersystemelapsed
HTqPCR-package3.950.004.05
cbind0.030.000.03
changeCtLayout0.040.000.05
clusterCt0.710.030.73
filterCategory0.120.000.12
filterCtData0.240.020.25
heatmapSig1.950.011.97
limmaCtData1.050.001.05
mannwhitneyCtData1.670.001.67
normalizeCtData0.400.040.44
plotCVBoxes0.180.000.17
plotCtBoxes0.060.000.06
plotCtCard0.070.000.06
plotCtCategory2.950.032.99
plotCtCor0.060.000.06
plotCtDensity0.030.000.03
plotCtHeatmap3.470.013.48
plotCtHistogram0.000.020.02
plotCtOverview0.130.000.13
plotCtPCA0.040.000.04
plotCtPairs0.930.010.94
plotCtRQ0.450.000.45
plotCtReps0.160.000.16
plotCtScatter0.030.000.03
plotCtSignificance0.450.000.45
plotGenes0.030.000.03
qPCRpros000
qPCRraw0.020.000.02
qPCRset-class0.010.020.03
readCtData0.080.000.08
setCategory5.520.095.61
ttestCtData1.340.001.34