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Package 156/389HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.8.0
Steffen Durinck
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/GenomeGraphs
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GenomeGraphs
Version: 1.8.0
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings GenomeGraphs_1.8.0.tar.gz
StartedAt: 2010-10-04 17:00:46 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:01:48 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 61.9 seconds
RetCode: 0
Status:  OK  
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GenomeGraphs.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomeGraphs)

GenomeGraphs.Rcheck/GenomeGraphs-Ex.timings:

nameusersystemelapsed
AnnotationTrack-class000
BaseTrack-class000
DisplayPars-class000
DisplayPars0.590.005.26
ExonArray-class000
Gene-class0.020.000.02
GeneModel-class0.120.000.12
GeneRegion-class000
GenericArray-class000
GenomeAxis-class000
HighlightRegion-class0.020.000.02
Ideogram-class000
ImplementsTrackOverlay-class000
Legend-class000
MappedRead-class000
Overlay-class000
RectangleOverlay-class000
Segmentation-class000
Smoothing-class000
TextOverlay-class000
Title-class000
TrackOverlay-class000
Transcript-class000
TranscriptRegion-class000
cn000
exonProbePos000
gdObject-class000
gdPlot2.230.007.60
getPar000
ideogramTab000
intensity000
makeAnnotationTrack0.030.000.03
makeBaseTrack000
makeExonArray0.020.000.02
makeGene000
makeGeneModel000
makeGeneRegion000
makeGenericArray000
makeGenomeAxis000
makeIdeogram000
makeLegend000
makeRectangleOverlay0.160.000.16
makeSegmentation0.150.000.14
makeSmoothing0.150.000.16
makeTextOverlay0.160.000.16
makeTitle0.010.000.01
makeTranscript000
probestart000
segEnd000
segStart000
segments000
seqDataEx0.030.000.03
setPar0.020.000.02
showDisplayOptions000
unrData000
unrNProbes000
unrPositions000
yeastCons1000