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Package 29/389HostnameOS / ArchBUILDCHECKBUILD BIN
ArrayExpress 1.8.0
Audrey Kauffmann
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/ArrayExpress
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: ArrayExpress
Version: 1.8.0
Command: chmod a+r ArrayExpress -R && D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build ArrayExpress
StartedAt: 2010-10-04 14:31:46 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 14:32:04 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 18.4 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'ArrayExpress/DESCRIPTION' ... OK
* preparing 'ArrayExpress':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package 'ArrayExpress' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ArrayExpress)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

trying URL 'http://www.ebi.ac.uk/microarray-as/ae/xml/experiments?keywords=pneumonia&species=homo+sapiens'
Content type 'text/xml;charset=UTF-8' length 113542 bytes (110 Kb)
opened URL
downloaded 110 Kb


Error: processing vignette 'ArrayExpress.Rnw' failed with diagnostics:
 chunk 1 (label=queryAE) 
Error in data.frame(ID = ID, Raw = Raw, Processed = Processed, ReleaseDate = date,  : 
  arguments imply differing number of rows: 19, 15, 16
Execution halted