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Package 25/389HostnameOS / ArchBUILDCHECKBUILD BIN
AnnotationDbi 1.10.2
Biocore Team c/o BioC user list
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/AnnotationDbi
Last Changed Rev: 48027 / Revision: 49923
Last Changed Date: 2010-07-08 17:51:40 -0700 (Thu, 08 Jul 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: AnnotationDbi
Version: 1.10.2
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings AnnotationDbi_1.10.2.tar.gz
StartedAt: 2010-10-04 15:49:33 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 15:56:52 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 439.1 seconds
RetCode: 0
Status:  OK 
CheckDir: AnnotationDbi.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/AnnotationDbi.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* this is package 'AnnotationDbi' version '1.10.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnotationDbi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

AnnotationDbi.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘AnnotationDbi’ ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Restoring the implicit generic function for ‘sample’ from package ‘base’
    into package ‘AnnotationDbi’; the generic differs from the default conversion (Formal arguments differ: (x, size, replace, prob), (x, size, replace, prob, ...))
Creating a new generic function for "sample" in "AnnotationDbi"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (AnnotationDbi)

AnnotationDbi.Rcheck/AnnotationDbi-Ex.timings:

nameusersystemelapsed
AnnDbBimap-envirAPI2.1780.6412.838
AnnDbObj-class16.237 8.78732.112
AnnDbPkg-checker188.940 8.823207.677
AnnDbPkg-maker0.0990.0140.113
Bimap-direction25.829 0.41026.400
Bimap-keys8.3410.1448.788
Bimap-toTable6.4100.1456.617
Bimap12.641 0.14012.850
BimapFiltering1.1170.0111.136
BimapFormatting2.6020.0392.652
GOFrame7.9990.8679.130
GOTerms-class0.0040.0000.004
KEGGFrame1.0120.0151.032
available.db0pkgs0.1020.0050.115
createSimpleBimap0.5210.0060.530
getProbeDataAffy0.0000.0000.001
getProbeData_1lq0.0000.0000.001
inpIDMapper0.0010.0000.002
makeProbePackage14.394 0.47915.378
make_eg_to_go_map0.6610.0310.701
print.probetable1.3630.1401.549
sqlForge-makeCHIPDB0.0020.0000.001
sqlForge-popDB0.0020.0000.002
sqlForge-wrapDBPackages0.0010.0010.001
toSQLStringSet0.0020.0000.002
unlist20.6060.0170.630