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Package 296/354HostnameOS / ArchBUILDCHECKBUILD BIN
rsbml 2.5.0
Michael Lawrence
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rsbml
Last Changed Rev: 42686 / Revision: 43434
Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: rsbml
Version: 2.5.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build rsbml
StartedAt: 2009-12-07 14:22:51 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 14:23:22 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 31.6 seconds
RetCode: 0
Status: OK
PackageFile: rsbml_2.5.0.tar.gz
PackageFileSize: 505.9 KiB

Command output

* checking for file 'rsbml/DESCRIPTION' ... OK
* preparing 'rsbml':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'rsbml' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c StringMap.c -o StringMap.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/common.h:28,
                 from StringMap.c:52:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c check.c -o check.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from check.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from check.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c doc.c -o doc.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from doc.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from doc.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c dom.c -o dom.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from dom.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from dom.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c graph.c -o graph.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from graph.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from graph.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c init.c -o init.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from init.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from init.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c io.c -o io.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from io.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from io.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c mathml.c -o mathml.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from mathml.c:3:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from mathml.c:3:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
mathml.c: In function 'rmathml_SEXP':
mathml.c:56: warning: unused variable 'closure'
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c simulate.c -o simulate.o
gcc -shared -s -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o mathml.o simulate.o -LC:/libSBML-3.3.2-expat/win32/bin -lsbml -Le:/biocbld/bbs-2.6-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (rsbml)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'rsbml_2.5.0.tar.gz'