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Package 233/354HostnameOS / ArchBUILDCHECKBUILD BIN
oligo 1.11.9
Benilton Carvalho
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/oligo
Last Changed Rev: 43391 / Revision: 43434
Last Changed Date: 2009-12-04 08:39:35 -0800 (Fri, 04 Dec 2009)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 
Package: oligo
Version: 1.11.9
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD build oligo
StartedAt: 2009-12-07 13:24:41 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 13:29:38 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 297.1 seconds
RetCode: 0
Status: OK
PackageFile: oligo_1.11.9.tar.gz
PackageFileSize: 701.4 KiB

Command output

* checking for file 'oligo/DESCRIPTION' ... OK
* preparing 'oligo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package 'oligo' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.6-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c ParserXYS.c -o ParserXYS.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.6-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c baseProfile.c -o baseProfile.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.6-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c basecontent.c -o basecontent.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.6-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c rma2.c -o rma2.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.6-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c rma_common.c -o rma_common.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.6-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c trimmed.c -o trimmed.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o oligo.so ParserXYS.o baseProfile.o basecontent.o rma2.o rma_common.o trimmed.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Welcome to oligoClasses version 1.9.14
Creating a new generic function for "boxplot" in "oligo"
** help
*** installing help indices
** building package indices ...
* DONE (oligo)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'oligo_1.11.9.tar.gz'