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Package 21/354HostnameOS / ArchBUILDCHECKBUILD BIN
altcdfenvs 2.9.0
Laurent Gautier
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/altcdfenvs
Last Changed Rev: 42686 / Revision: 43434
Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: altcdfenvs
Version: 2.9.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build altcdfenvs
StartedAt: 2009-12-07 13:31:02 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 13:32:39 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 97.4 seconds
RetCode: 0
Status: OK
PackageFile: altcdfenvs_2.9.0.tar.gz
PackageFileSize: 282 KiB

Command output

* checking for file 'altcdfenvs/DESCRIPTION' ... OK
* preparing 'altcdfenvs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package 'altcdfenvs' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:Biobase :

	 updateObject 


	The following object(s) are masked from package:base :

	 Map,
	 cbind,
	 mapply,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rbind,
	 rep.int,
	 table 


*** Deprecation warning ***
The matchprobes package is deprecated and will not be supported
anymore starting with Bioconductor 2.4. Please switch to using the
Biostrings package for efficient string manipulations. If you need
to build a probe package, please see the makeProbePackage vignette
in the AnnotationDbi package.

Loading required package: graph

Attaching package: 'graph'


	The following object(s) are masked from package:Biostrings :

	 complement 


Attaching package: 'hypergraph'


	The following object(s) are masked from package:IRanges :

	 head,
	 tail 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
Warning in matchSignature(signature, fdef, where) :
  in the method signature for function "toHypergraph" no definition for class: "CdfEnvAffy"
Creating a new generic function for "plot" in "altcdfenvs"
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (altcdfenvs)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'altcdfenvs_2.9.0.tar.gz'