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Package 189/354HostnameOS / ArchBUILDCHECKBUILD BIN
LMGene 1.17.0
John Tillinghast
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LMGene
Last Changed Rev: 42686 / Revision: 43434
Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: LMGene
Version: 1.17.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes LMGene_1.17.0.tar.gz
StartedAt: 2009-12-07 18:03:01 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 18:05:12 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 130.4 seconds
RetCode: 0
Status: OK
CheckDir: LMGene.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/LMGene.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-11-30 r50622)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'LMGene/DESCRIPTION' ... OK
* this is package 'LMGene' version '1.17.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LMGene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: GetLMObj.Rd:14-15: Dropping empty section \details
prepare_Rd: GetLMObj.Rd:20-21: Dropping empty section \note
prepare_Rd: GetLMObj.Rd:18: Dropping empty section \references
prepare_Rd: GetLMObj.Rd:22: Dropping empty section \seealso
prepare_Rd: lnormeS.Rd:17-19: Dropping empty section \details
prepare_Rd: lnormeS.Rd:25-26: Dropping empty section \note
prepare_Rd: mlm2lm.Rd:22: Dropping empty section \seealso
prepare_Rd: msa.Rd:18: Dropping empty section \seealso
prepare_Rd: psmeans.Rd:29-30: Dropping empty section \note
prepare_Rd: psmeans.Rd:27: Dropping empty section \references
prepare_Rd: psmeans.Rd:31: Dropping empty section \seealso
prepare_Rd: sample.ind.Rd:14-16: Dropping empty section \details
prepare_Rd: transeS.Rd:19-21: Dropping empty section \details
prepare_Rd: transeS.Rd:27-28: Dropping empty section \note
prepare_Rd: transeS.Rd:25: Dropping empty section \references
prepare_Rd: transeS.Rd:29: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

LMGene.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘LMGene’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
** help
*** installing help indices
** building package indices ...
* DONE (LMGene)