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Package 177/354HostnameOS / ArchBUILDCHECKBUILD BIN
ITALICS 2.7.0
Guillem Rigaill
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ITALICS
Last Changed Rev: 42686 / Revision: 43434
Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
Package: ITALICS
Version: 2.7.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh ITALICS_2.7.0.tar.gz /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R ITALICS.buildbin-libdir
StartedAt: 2009-12-07 19:22:37 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 19:22:48 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 10.8 seconds
RetCode: 0
Status: OK
PackageFile: ITALICS_2.7.0.tgz
PackageFileSize: 378.8 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=ITALICS.buildbin-libdir ITALICS_2.7.0.tar.gz'

* installing *source* package ‘ITALICS’ ...
** R
** inst
** preparing package for lazy loading

######################################################################################

Have fun with GLAD

For smoothing it is possible to use either
the AWS algorithm (Polzehl and Spokoiny, 2002)
or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics,  2008)

If you use the package with AWS, please cite:
Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)

If you use the package with HaarSeg, please cite:
Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar, Bioinformatics, 2008)

For fast computation it is recommanded to use
the daglad function with smoothfunc=haarseg

######################################################################################

New options are available in daglad: see help for details.
Loading required package: oligoClasses
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Welcome to oligoClasses version 1.9.14
Loading required package: preprocessCore
Welcome to oligo version 1.11.9
Loading required package: RSQLite
Loading required package: DBI
** help
*** installing help indices
** building package indices ...
* DONE (ITALICS)