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Package 151/354HostnameOS / ArchBUILDCHECKBUILD BIN
GlobalAncova 3.13.0
R. Meister
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GlobalAncova
Last Changed Rev: 42686 / Revision: 43434
Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GlobalAncova
Version: 3.13.0
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes GlobalAncova_3.13.0.tar.gz
StartedAt: 2009-12-07 17:18:16 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 17:19:28 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 71.5 seconds
RetCode: 0
Status: OK
CheckDir: GlobalAncova.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/GlobalAncova.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-11-10 r50388)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GlobalAncova/DESCRIPTION' ... OK
* this is package 'GlobalAncova' version '3.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GlobalAncova' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GlobalAncova.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'GlobalAncova' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut':
GlobalAncova.c:268: warning: 'ord_perm' may be used uninitialized in this function
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:166: warning: 'ord_perm' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c ludcmp.c -o ludcmp.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c matrix.c -o matrix.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "pGAapprox": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
  Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "GlobalAncova.closed": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
  Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "Plot.genes": formal arguments in method and function do not appear in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "Plot.subjects": formal arguments in method and function do not appear in the same order
** help
*** installing help indices
** building package indices ...
* DONE (GlobalAncova)