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Package 133/354HostnameOS / ArchBUILDCHECKBUILD BIN
GeneRegionScan 1.3.2
Lasse Folkersen
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneRegionScan
Last Changed Rev: 42842 / Revision: 43434
Last Changed Date: 2009-11-06 02:28:15 -0800 (Fri, 06 Nov 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 
Package: GeneRegionScan
Version: 1.3.2
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD build GeneRegionScan
StartedAt: 2009-12-07 15:52:26 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 15:52:45 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 18.8 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GeneRegionScan/DESCRIPTION' ... OK
* preparing 'GeneRegionScan':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package ‘GeneRegionScan’ ...
** R
** data
** exec
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:Biobase :

	 updateObject 


	The following object(s) are masked from package:base :

	 Map,
	 cbind,
	 mapply,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rbind,
	 rep.int,
	 table 

** help
*** installing help indices
** building package indices ...
* DONE (GeneRegionScan)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:Biobase :

	 updateObject 


	The following object(s) are masked from package:base :

	 Map,
	 cbind,
	 mapply,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rbind,
	 rep.int,
	 table 


Error: processing vignette 'GeneRegionScan.Rnw' failed with diagnostics:
 chunk 6 (label=plot1) 
Error in grep("\\\\", gene, extended = FALSE) : 
  unused argument(s) (extended = FALSE)
Execution halted