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Package 131/354HostnameOS / ArchBUILDCHECKBUILD BIN
GeneR 2.17.0
Y. d'Aubenton-Carafa
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneR
Last Changed Rev: 42686 / Revision: 43434
Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GeneR
Version: 2.17.0
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD build GeneR
StartedAt: 2009-12-07 13:03:20 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 13:03:32 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 11.5 seconds
RetCode: 0
Status: OK
PackageFile: GeneR_2.17.0.tar.gz
PackageFileSize: 252.2 KiB

Command output

* checking for file 'GeneR/DESCRIPTION' ... OK
* preparing 'GeneR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* installing the package to re-build vignettes
* installing *source* package 'GeneR' ...
** libs
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GeneR_glob.cc -o GeneR_glob.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GeneR_seq.cc -o GeneR_seq.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c complementaire.cc -o complementaire.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c compoSeq.cc -o compoSeq.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c dnaRna.cc -o dnaRna.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c libIndex.cc -o libIndex.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c libStrings.cc -o libStrings.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c makeIndex.cc -o makeIndex.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c masked.cc -o masked.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c misc.cc -o misc.o
misc.cc: In function 'SEXPREC* str_to_nbstr(SEXPREC*, SEXPREC*)':
misc.cc:31: warning: 'multiple' may be used uninitialized in this function
misc.cc:30: warning: 'ans' may be used uninitialized in this function
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readEmblDescript.cc -o readEmblDescript.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readIndex.cc -o readIndex.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readLocation.cc -o readLocation.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readSeqEmbl.cc -o readSeqEmbl.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readSeqFasta.cc -o readSeqFasta.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readSeqGbk.cc -o readSeqGbk.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c seqManip.cc -o seqManip.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c strcasestr.c -o strcasestr.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c translate.cc -o translate.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c upperSeq.cc -o upperSeq.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c vecteurs.cc -o vecteurs.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c writeFasta.cc -o writeFasta.o
g++ -shared -L/usr/local/lib64 -o GeneR.so GeneR_glob.o GeneR_seq.o complementaire.o compoSeq.o dnaRna.o libIndex.o libStrings.o makeIndex.o masked.o misc.o readEmblDescript.o readIndex.o readLocation.o readSeqEmbl.o readSeqFasta.o readSeqGbk.o seqManip.o strcasestr.o translate.o upperSeq.o vecteurs.o writeFasta.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (GeneR)
* creating vignettes ... OK
* cleaning src
* running cleanup
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GeneR_2.17.0.tar.gz'