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Package 150/354HostnameOS / ArchBUILDCHECKBUILD BIN
GLAD 2.8.0
Philippe Hupe
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GLAD
Last Changed Rev: 42814 / Revision: 43434
Last Changed Date: 2009-11-04 09:47:17 -0800 (Wed, 04 Nov 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
Package: GLAD
Version: 2.8.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh GLAD_2.8.0.tar.gz /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R GLAD.buildbin-libdir
StartedAt: 2009-12-07 19:21:18 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 19:21:58 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 40.4 seconds
RetCode: 0
Status: OK
PackageFile: GLAD_2.8.0.tgz
PackageFileSize: 1.405 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=GLAD.buildbin-libdir GLAD_2.8.0.tar.gz'

* installing *source* package ‘GLAD’ ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
GSL has been found on the operating system
operating system: Darwin
configure: creating ./config.status
config.status: creating src/Makevars

src/Makevars file

PKG_LIBS = -L/usr/local/lib -lgsl -lgslcblas -lm  
PKG_CPPFLAGS += -DIS_MAC_OS

** libs
** arch - i386
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c BkpInfo.cpp -o BkpInfo.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c HaarSeg.cpp -o HaarSeg.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c MoveBkp.cpp -o MoveBkp.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c OutliersGNL.cpp -o OutliersGNL.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c chrBreakpoints.cpp -o chrBreakpoints.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c cutree.cpp -o cutree.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c daglad.cpp -o daglad.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c distance.cpp -o distance.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c filterBkp.cpp -o filterBkp.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c findCluster.cpp -o findCluster.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c glad-utils.cpp -o glad-utils.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c hclust.cpp -o hclust.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -c laws.c -o laws.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c loopRemove.cpp -o loopRemove.o
g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GLAD.so BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (GLAD)

                INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=GLAD.buildbin-libdir --libs-only GLAD_2.8.0.tar.gz'

* installing *source* package ‘GLAD’ ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
GSL has been found on the operating system
operating system: Darwin
configure: creating ./config.status
config.status: creating src/Makevars

src/Makevars file

PKG_LIBS = -L/usr/local/lib -lgsl -lgslcblas -lm  
PKG_CPPFLAGS += -DIS_MAC_OS

** libs
** arch - ppc
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c BkpInfo.cpp -o BkpInfo.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c HaarSeg.cpp -o HaarSeg.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c MoveBkp.cpp -o MoveBkp.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c OutliersGNL.cpp -o OutliersGNL.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c chrBreakpoints.cpp -o chrBreakpoints.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c cutree.cpp -o cutree.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c daglad.cpp -o daglad.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c distance.cpp -o distance.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c filterBkp.cpp -o filterBkp.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c findCluster.cpp -o findCluster.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c glad-utils.cpp -o glad-utils.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c hclust.cpp -o hclust.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c laws.c -o laws.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -c loopRemove.cpp -o loopRemove.o
g++-4.2 -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GLAD.so BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (GLAD)

                INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=GLAD.buildbin-libdir --libs-only GLAD_2.8.0.tar.gz'

* installing *source* package ‘GLAD’ ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
GSL has been found on the operating system
operating system: Darwin
configure: creating ./config.status
config.status: creating src/Makevars

src/Makevars file

PKG_LIBS = -L/usr/local/lib -lgsl -lgslcblas -lm  
PKG_CPPFLAGS += -DIS_MAC_OS

** libs
** arch - x86_64
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c BkpInfo.cpp -o BkpInfo.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c HaarSeg.cpp -o HaarSeg.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c MoveBkp.cpp -o MoveBkp.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c OutliersGNL.cpp -o OutliersGNL.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c chrBreakpoints.cpp -o chrBreakpoints.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c cutree.cpp -o cutree.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c daglad.cpp -o daglad.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c distance.cpp -o distance.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c filterBkp.cpp -o filterBkp.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c findCluster.cpp -o findCluster.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c glad-utils.cpp -o glad-utils.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c hclust.cpp -o hclust.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -c laws.c -o laws.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64 -DIS_MAC_OS -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c loopRemove.cpp -o loopRemove.o
g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GLAD.so BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (GLAD)