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Package 102/354HostnameOS / ArchBUILDCHECKBUILD BIN
EBImage 3.3.1
Gregoire Pau
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/EBImage
Last Changed Rev: 43352 / Revision: 43434
Last Changed Date: 2009-12-02 15:10:22 -0800 (Wed, 02 Dec 2009)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: EBImage
Version: 3.3.1
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD build EBImage
StartedAt: 2009-12-07 13:36:41 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 13:37:10 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 29.5 seconds
RetCode: 0
Status: OK
PackageFile: EBImage_3.3.1.tar.gz
PackageFileSize: 9.756 MiB

Command output

* checking for file 'EBImage/DESCRIPTION' ... OK
* preparing 'EBImage':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package 'EBImage' ...
checking for Magick-config... yes
* found ImageMagick version 6.4.3 Q16 
* found ImageMagick includes in -I/usr/include/ImageMagick
checking for pkg-config... yes
* compiling with GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c EBImage.c -o EBImage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c conversions.c -o conversions.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c display.c -o display.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c distmap.c -o distmap.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c drawable.c -o drawable.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c features_haralick.c -o features_haralick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c features_hull.c -o features_hull.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c features_moments.c -o features_moments.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c features_zernike.c -o features_zernike.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c filters_magick.c -o filters_magick.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c floodFill.cpp -o floodFill.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c io.c -o io.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c morphology.c -o morphology.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c normalize.c -o normalize.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c objects.c -o objects.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c ocontour.c -o ocontour.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c propagate.cpp -o propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c thresh.c -o thresh.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c tile.c -o tile.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c tools.c -o tools.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c translate.c -o translate.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include   -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick  -fpic  -g -O2 -Wall -c watershed.cpp -o watershed.o
g++ -shared -L/usr/local/lib64 -o EBImage.so EBImage.o conversions.o display.o distmap.o drawable.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_magick.o floodFill.o io.o morphology.o normalize.o objects.o ocontour.o propagate.o thresh.o tile.o tools.o translate.o watershed.o -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lz -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -L/usr/lib64 -L/usr/lib64 -lfreetype -lz -L/usr/lib64 -lMagickCore -L/usr/lib64 -lMagickWand -lMagickCore -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (EBImage)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'EBImage_3.3.1.tar.gz'