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Package 96/354HostnameOS / ArchBUILDCHECKBUILD BIN
DNAcopy 1.21.0
Venkatraman E. Seshan
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DNAcopy
Last Changed Rev: 42686 / Revision: 43434
Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: DNAcopy
Version: 1.21.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh DNAcopy_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R DNAcopy.buildbin-libdir
StartedAt: 2009-12-07 19:38:46 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 19:38:54 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 8.0 seconds
RetCode: 0
Status: OK
PackageFile: DNAcopy_1.21.0.tgz
PackageFileSize: 310.6 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=DNAcopy.buildbin-libdir DNAcopy_1.21.0.tar.gz'

* installing *source* package ‘DNAcopy’ ...
** libs
** arch - i386
gfortran -arch i386   -fPIC  -g -O2 -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In function ‘wtmaxo’:
cbsWtstats.f:17: warning: ‘tmaxj’ may be used uninitialized in this function
cbsWtstats.f:17: warning: ‘tmaxi’ may be used uninitialized in this function
gfortran -arch i386   -fPIC  -g -O2 -Wall -c cbststats.f -o cbststats.o
cbststats.f: In function ‘tmaxo’:
cbststats.f:11: warning: ‘sxmxi’ may be used uninitialized in this function
gfortran -arch i386   -fPIC  -g -O2 -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -c esegment.f -o esegment.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c rshared.c -o rshared.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -c smoothCNA.f -o smoothCNA.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In function ‘wtmaxo’:
cbsWtstats.f:17: warning: ‘tmaxj’ may be used uninitialized in this function
cbsWtstats.f:17: warning: ‘tmaxi’ may be used uninitialized in this function
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c cbststats.f -o cbststats.o
cbststats.f: In function ‘tmaxo’:
cbststats.f:11: warning: ‘sxmxi’ may be used uninitialized in this function
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c esegment.f -o esegment.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c flchoose.c -o flchoose.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c fphyper.c -o fphyper.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c fpnorm.c -o fpnorm.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c rshared.c -o rshared.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c smoothCNA.f -o smoothCNA.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (DNAcopy)