Package: ChIPpeakAnno

Version: 1.3.1

Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD build ChIPpeakAnno

StartedAt: 2009-12-07 15:52:06 -0800 (Mon, 07 Dec 2009)

EndedAt: 2009-12-07 15:52:24 -0800 (Mon, 07 Dec 2009)

EllapsedTime: 18.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'ChIPpeakAnno/DESCRIPTION' ... OK
* preparing 'ChIPpeakAnno':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package ‘ChIPpeakAnno’ ...
** R
** data
** inst
** help
*** installing help indices
** building package indices ...
* DONE (ChIPpeakAnno)
* creating vignettes ... ERROR
Loading required package: biomaRt
Loading required package: multtest
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:Biobase :

	 updateObject 


	The following object(s) are masked from package:base :

	 Map,
	 cbind,
	 mapply,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rbind,
	 rep.int,
	 table 

Loading required package: Biostrings
Loading required package: BSgenome
Loading required package: BSgenome.Ecoli.NCBI.20080805
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: org.Hs.eg.db

Error: processing vignette 'ChIPpeakAnno.Rnw' failed with diagnostics:
 chunk 1 
Error in sub(" +", "", allChr, extended = TRUE) : 
  unused argument(s) (extended = TRUE)
Execution halted