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Package 56/354HostnameOS / ArchBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.11.1
B. M. Bolstad
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BufferedMatrixMethods
Last Changed Rev: 43137 / Revision: 43434
Last Changed Date: 2009-11-18 18:29:35 -0800 (Wed, 18 Nov 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: BufferedMatrixMethods
Version: 1.11.1
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes BufferedMatrixMethods_1.11.1.tar.gz
StartedAt: 2009-12-07 16:13:05 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 16:13:22 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 16.5 seconds
RetCode: 0
Status: OK
CheckDir: BufferedMatrixMethods.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-11-10 r50388)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.11.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
BufferedMatrix.justRMA: possible error in gsub("^/?([^/]*/)*", "",
  unlist(filenames), extended = TRUE): unused argument(s) (extended =
  TRUE)
BufferedMatrix.read.celfiles: possible error in gsub("^/?([^/]*/)*",
  "", unlist(filenames), extended = TRUE): unused argument(s) (extended
  = TRUE)
BufferedMatrix.read.probematrix: possible error in gsub("^/?([^/]*/)*",
  "", unlist(filenames), extended = TRUE): unused argument(s) (extended
  = TRUE)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

BufferedMatrixMethods.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'BufferedMatrixMethods' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.6-bioc/R/library/BufferedMatrix/include"   -fpic  -g -O2 -Wall -c init_package.c -o init_package.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.6-bioc/R/library/BufferedMatrix/include"   -fpic  -g -O2 -Wall -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: 'min' defined but not used
gcc -std=gnu99 -shared -L/usr/local/lib64 -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
** R
** preparing package for lazy loading

Attaching package: 'BufferedMatrix'


	The following object(s) are masked from package:base :

	 colMeans,
	 colSums,
	 rowMeans,
	 rowSums 

** help
*** installing help indices
** building package indices ...
* DONE (BufferedMatrixMethods)