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Package 299/353HostnameOS / ArchBUILDCHECKBUILD BIN
rtracklayer 1.6.0
Michael Lawrence
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/rtracklayer
Last Changed Rev: 42684 / Revision: 45705
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ WARNINGS ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 
Package: rtracklayer
Version: 1.6.0
Command: /home/biocbuild/bbs-2.5-bioc/R/bin/R CMD check --no-vignettes rtracklayer_1.6.0.tar.gz
StartedAt: 2010-04-03 06:50:40 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 06:52:57 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 136.5 seconds
RetCode: 0
Status: WARNINGS
CheckDir: rtracklayer.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.5-bioc/meat/rtracklayer.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'rtracklayer/DESCRIPTION' ... OK
* this is package 'rtracklayer' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rtracklayer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  IRanges RangedDataList
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  /loc/home/biocbuild/bbs-2.5-bioc/meat/rtracklayer.Rcheck/00check.log
for details

rtracklayer.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘rtracklayer’ ...
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: bitops
** help
*** installing help indices
** building package indices ...
* DONE (rtracklayer)