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Package 86/353HostnameOS / ArchBUILDCHECKBUILD BIN
crlmm 1.4.5
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/crlmm
Last Changed Rev: 44802 / Revision: 45705
Last Changed Date: 2010-02-22 11:46:13 -0800 (Mon, 22 Feb 2010)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
Package: crlmm
Version: 1.4.5
Command: /Users/biocbuild/BBS/utils/build-universal.sh crlmm_1.4.5.tar.gz /Library/Frameworks/R.framework/Versions/2.10/Resources/bin/R crlmm.buildbin-libdir
StartedAt: 2010-04-03 07:27:50 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 07:28:16 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 25.9 seconds
RetCode: 0
Status: OK
PackageFile: crlmm_1.4.5.tgz
PackageFileSize: 2.442 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=crlmm.buildbin-libdir crlmm_1.4.5.tar.gz'

* installing *source* package ‘crlmm’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c gtypeCaller.c -o gtypeCaller.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c gtypeCallerNM.c -o gtypeCallerNM.o
gtypeCallerNM.c: In function ‘gtypeCallerPart1nm’:
gtypeCallerNM.c:212: warning: implicit declaration of function ‘mad_median’
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c gtypeCallerNormalNoN.c -o gtypeCallerNormalNoN.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c gtypeCallerTNoN.c -o gtypeCallerTNoN.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c init.c -o init.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c tmp.c -o tmp.o
tmp.c: In function ‘test’:
tmp.c:17: warning: implicit declaration of function ‘genotypeConfidence’
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c trimmed.c -o trimmed.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c utils.c -o utils.o
utils.c: In function ‘mad_median’:
utils.c:124: warning: unused variable ‘n_ignore’
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o crlmm.so gtypeCaller.o gtypeCallerNM.o gtypeCallerNormalNoN.o gtypeCallerTNoN.o init.o tmp.o trimmed.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c gtypeCaller.c -o gtypeCaller.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c gtypeCallerNM.c -o gtypeCallerNM.o
gtypeCallerNM.c: In function ‘gtypeCallerPart1nm’:
gtypeCallerNM.c:212: warning: implicit declaration of function ‘mad_median’
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c gtypeCallerNormalNoN.c -o gtypeCallerNormalNoN.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c gtypeCallerTNoN.c -o gtypeCallerTNoN.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c init.c -o init.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c tmp.c -o tmp.o
tmp.c: In function ‘test’:
tmp.c:17: warning: implicit declaration of function ‘genotypeConfidence’
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c trimmed.c -o trimmed.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c utils.c -o utils.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o crlmm.so gtypeCaller.o gtypeCallerNM.o gtypeCallerNormalNoN.o gtypeCallerTNoN.o init.o tmp.o trimmed.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c gtypeCaller.c -o gtypeCaller.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c gtypeCallerNM.c -o gtypeCallerNM.o
gtypeCallerNM.c: In function ‘gtypeCallerPart1nm’:
gtypeCallerNM.c:212: warning: implicit declaration of function ‘mad_median’
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c gtypeCallerNormalNoN.c -o gtypeCallerNormalNoN.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c gtypeCallerTNoN.c -o gtypeCallerTNoN.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c init.c -o init.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c tmp.c -o tmp.o
tmp.c: In function ‘test’:
tmp.c:17: warning: implicit declaration of function ‘genotypeConfidence’
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c trimmed.c -o trimmed.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include -I/Library/Frameworks/R.framework/Versions/2.10/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c utils.c -o utils.o
utils.c: In function ‘mad_median’:
utils.c:124: warning: unused variable ‘n_ignore’
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o crlmm.so gtypeCaller.o gtypeCallerNM.o gtypeCallerNormalNoN.o gtypeCallerTNoN.o init.o tmp.o trimmed.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "ncol" in "crlmm"
Creating a new generic function for "nrow" in "crlmm"
Creating a new generic function for "plot" in "crlmm"
Creating a new generic function for "points" in "crlmm"
Creating a new generic function for "update" in "crlmm"
Creating a new generic function for "boxplot" in "crlmm"
** help
*** installing help indices
** building package indices ...
* DONE (crlmm)