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Package 251/353HostnameOS / ArchBUILDCHECKBUILD BIN
PGSEA 1.14.0
Karl Dykema
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/PGSEA
Last Changed Rev: 42684 / Revision: 45705
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64 [ ERROR ] skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: PGSEA
Version: 1.14.0
Command: /home/biocbuild/bbs-2.5-bioc/R/bin/R CMD build PGSEA
StartedAt: 2010-04-03 01:51:42 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 01:53:46 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 123.8 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'PGSEA/DESCRIPTION' ... OK
* preparing 'PGSEA':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package ‘PGSEA’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
* DONE (PGSEA)
* creating vignettes ... ERROR
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: org.Hs.eg.db
Loading required package: DBI
Loading required package: GO.db
Loading required package: GSEABase
Loading required package: annotate
Loading required package: graph
Loading required package: RCurl
Loading required package: bitops
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE7023/GSE7023_series_matrix.txt.gz'

Error: processing vignette 'PGSEA2.Rnw' failed with diagnostics:
 chunk 1 
Error in download.file(sprintf("ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/%s/%s",  : 
  cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE7023/GSE7023_series_matrix.txt.gz'
Execution halted