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Package 90/353HostnameOS / ArchBUILDCHECKBUILD BIN
DAVIDQuery 1.4.0
Roger Day
Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/DAVIDQuery
Last Changed Rev: 42684 / Revision: 45705
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  ERROR  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ ERROR ] OK 
Package: DAVIDQuery
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.10/Resources/bin/R CMD check --no-vignettes DAVIDQuery_1.4.0.tar.gz
StartedAt: 2010-04-03 05:12:51 -0700 (Sat, 03 Apr 2010)
EndedAt: 2010-04-03 05:13:10 -0700 (Sat, 03 Apr 2010)
EllapsedTime: 19.4 seconds
RetCode: 1
Status: ERROR
CheckDir: DAVIDQuery.Rcheck
Warnings: NA

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.5-bioc/meat/DAVIDQuery.Rcheck'
* using R version 2.10.1 Patched (2009-12-14 r50738)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'DAVIDQuery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DAVIDQuery' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DAVIDQuery' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... ERROR
Running examples in 'DAVIDQuery-Ex.R' failed.
The error most likely occurred in:

> ### * DAVIDQuery
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: DAVIDQuery
> ### Title: DAVIDQuery
> ### Aliases: DAVIDQuery
> ### Keywords: database
> 
> ### ** Examples
> 
> result = DAVIDQuery(testMe=TRUE)$DAVIDQueryResult
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  Warning: downloadFileName is not found in reply html. 

Warning in file(file, "rt") :
  cannot open: HTTP status was '404 //UserDownload/'
Error in file(file, "rt") : cannot open the connection
> print(length(result))
[1] 1
> print(result$firstURL)
Error in result$firstURL : $ operator is invalid for atomic vectors
Calls: print
Execution halted

DAVIDQuery.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘DAVIDQuery’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (DAVIDQuery)