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Package 120/353HostnameOS / ArchBUILDCHECKBUILD BIN
flowUtils 1.6.0
Nishant Gopalakrishnan
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/flowUtils
Last Changed Rev: 42684 / Revision: 43539
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: flowUtils
Version: 1.6.0
Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD check --no-vignettes flowUtils_1.6.0.tar.gz
StartedAt: 2009-12-14 04:52:41 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 04:53:54 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 72.9 seconds
RetCode: 0
Status: OK
CheckDir: flowUtils.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/flowUtils.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowUtils/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowUtils' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowUtils' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
translateGate: no visible global function definition for
  'xmlPolygonGateNode'
translateGate: no visible global function definition for
  'xmlRectangleGateNode'
xmlCompensationEditorWin: no visible global function definition for
  'xmlWindowPosition'
xmlEllipsoidGateNode: no visible binding for global variable
  'xmlDimensionNode'
xmlEllipsoidGateNode: no visible global function definition for
  'xmlFociNode'
xmlEllipsoidGateNode: no visible binding for global variable
  'xmlVertexNode'
xmlEllipsoidGateNode: no visible global function definition for
  'xmlEdgeNode'
xmlGraphWin: no visible binding for global variable 'xmlTextTraits'
xmlGraphWin: no visible global function definition for
  'xmlWindowPosition'
xmlGroupsWin: no visible global function definition for 'xmlGraph'
xmlLayoutEditorWin: no visible global function definition for
  'xmlWindowPosition'
xmlPolygonGateWin: no visible binding for global variable
  'xmlDimensionNode'
xmlPolygonGateWin: no visible binding for global variable
  'xmlVertexNode'
xmlRectangleGateWin : <anonymous>: no visible global function
  definition for 'xmlDimensionNode'
xmlSampleNodeWin: no visible global function definition for
  'xmlSubpopulations'
xmlSampleNodeWin: no visible global function definition for 'xmlGraph'
xmlSubpopulationsHelper: no visible global function definition for
  'xmlGraph'
xmlSubpopulationsHelper: no visible global function definition for
  'xmlGateNode'
xmlTableEditorWin: no visible global function definition for
  'xmlWindowPosition'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

flowUtils.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'flowUtils' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)

Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter 

Warning in namespaceImportFrom(self, asNamespace(ns)) :
  replacing previous import: nodes
Warning in namespaceImportFrom(self, asNamespace(ns)) :
  replacing previous import: addNode
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (flowUtils)