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Package 113/353HostnameOS / ArchBUILDCHECKBUILD BIN
flowClust 2.4.0
Raphael Gottardo
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/flowClust
Last Changed Rev: 42684 / Revision: 43539
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ OK ] OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: flowClust
Version: 2.4.0
Command: /Library/Frameworks/R.framework/Versions/2.10/Resources/bin/R CMD build flowClust
StartedAt: 2009-12-14 03:12:34 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 03:14:45 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 131.3 seconds
RetCode: 0
Status: OK
PackageFile: flowClust_2.4.0.tar.gz
PackageFileSize: 292 KiB

Command output

* checking for file 'flowClust/DESCRIPTION' ... OK
* preparing 'flowClust':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* installing the package to re-build vignettes
* installing *source* package ‘flowClust’ ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c BoxCox.c -o BoxCox.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c Nu.c -o Nu.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c flowClust.c -o flowClust.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c flowClustGaussian.c -o flowClustGaussian.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c ranMVNT.c -o ranMVNT.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowClust.so BoxCox.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
by using mclust, you accept the license agreement in the LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)

Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter 

Warning in .findOrCopyClass(class2, classDef2, where, "subclass") :
  Class "Ulist" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported?  Making a copy in package "flowClust"
Warning in .findOrCopyClass(class2, classDef2, where, "subclass") :
  Class "Uvector" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported?  Making a copy in package "flowClust"
** help
*** installing help indices
** building package indices ...
* DONE (flowClust)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* running cleanup
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'flowClust_2.4.0.tar.gz'