Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 86/353HostnameOS / ArchBUILDCHECKBUILD BIN
crlmm 1.4.1
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/crlmm
Last Changed Rev: 42915 / Revision: 43539
Last Changed Date: 2009-11-11 04:41:51 -0800 (Wed, 11 Nov 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: crlmm
Version: 1.4.1
Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD check --no-vignettes crlmm_1.4.1.tar.gz
StartedAt: 2009-12-14 04:37:48 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 04:42:07 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 258.2 seconds
RetCode: 0
Status: OK
CheckDir: crlmm.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/crlmm.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'crlmm/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'crlmm' version '1.4.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'crlmm' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
crlmmWrapper: no visible binding for global variable 'res'
boxplot,CrlmmSetList: no visible binding for global variable 'cols'
boxplot,CrlmmSetList: no visible binding for global variable 'i'
update,CrlmmSetList: no visible binding for global variable
  'crlmmSetList'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

crlmm.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'crlmm' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCaller.c -o gtypeCaller.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCallerNM.c -o gtypeCallerNM.o
gtypeCallerNM.c: In function 'gtypeCallerPart1nm':
gtypeCallerNM.c:212: warning: implicit declaration of function 'mad_median'
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCallerNormalNoN.c -o gtypeCallerNormalNoN.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gtypeCallerTNoN.c -o gtypeCallerTNoN.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c tmp.c -o tmp.o
tmp.c: In function 'test':
tmp.c:17: warning: implicit declaration of function 'genotypeConfidence'
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c trimmed.c -o trimmed.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124: warning: unused variable 'n_ignore'
gcc -shared -s -o crlmm.dll tmp.def gtypeCaller.o gtypeCallerNM.o gtypeCallerNormalNoN.o gtypeCallerTNoN.o init.o tmp.o trimmed.o utils.o -Le:/biocbld/bbs-2.5-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "ncol" in "crlmm"
Creating a new generic function for "nrow" in "crlmm"
Creating a new generic function for "plot" in "crlmm"
Creating a new generic function for "points" in "crlmm"
Creating a new generic function for "update" in "crlmm"
Creating a new generic function for "boxplot" in "crlmm"
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (crlmm)