EBImage 3.2.0
Gregoire Pau
| Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/EBImage | | Last Changed Rev: 42684 / Revision: 43539 | | Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/EBImage.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EBImage/DESCRIPTION' ... OK
* this is package 'EBImage' version '3.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBImage' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
Running 'test.R'
Comparing 'test.Rout' to 'test.Rout.save' ...174c174
< checking 'watershed' ... OK (hash=331831724)
---
> checking 'watershed' ... OK (hash=331821330)
186,190c186,190
< checking 'reenumerate' ... OK (hash=524381786)
< checking 'hullFeatures' ... OK (hash=3426282)
< checking 'rmObjects' ... OK (hash=300497845)
< checking 'getFeatures' ... OK (hash=112463884)
< checking 'paintObjects' ... OK (hash=55129969)
---
> checking 'reenumerate' ... OK (hash=524698803)
> checking 'hullFeatures' ... OK (hash=3425915)
> checking 'rmObjects' ... OK (hash=300487451)
> checking 'getFeatures' ... OK (hash=112458679)
> checking 'paintObjects' ... OK (hash=55130488)
221c221
< checking 'resize' ... OK (hash=214938067)
---
> checking 'resize' ... OK (hash=214938068)
236c236
< checking 'watershed' ... OK (hash=331831724)
---
> checking 'watershed' ... OK (hash=331821330)
248,251c248,251
< checking 'reenumerate' ... OK (hash=524381786)
< checking 'hullFeatures' ... OK (hash=3426282)
< checking 'rmObjects' ... OK (hash=300497845)
< checking 'getFeatures' ... OK (hash=243271116)
---
> checking 'reenumerate' ... OK (hash=524698803)
> checking 'hullFeatures' ... OK (hash=3425915)
> checking 'rmObjects' ... OK (hash=300487451)
> checking 'getFeatures' ... OK (hash=243259173)
300c300
< checking 'watershed' ... OK (hash=2135319407)
---
> checking 'watershed' ... OK (hash=2135276245)
310,313c310,313
< checking 'reenumerate' ... OK (hash=4761151938)
< checking 'hullFeatures' ... OK (hash=18493867)
< checking 'rmObjects' ... OK (hash=1828514955)
< checking 'getFeatures' ... OK (hash=535965871)
---
> checking 'reenumerate' ... OK (hash=4762468379)
> checking 'hullFeatures' ... OK (hash=18493133)
> checking 'rmObjects' ... OK (hash=1828471793)
> checking 'getFeatures' ... OK (hash=535955461)
345c345
< checking 'resize' ... OK (hash=12489520650)
---
> checking 'resize' ... OK (hash=12489520632)
361c361
< checking 'watershed' ... OK (hash=8974534366)
---
> checking 'watershed' ... OK (hash=8974349738)
371,374c371,374
< checking 'reenumerate' ... OK (hash=19460100996)
< checking 'hullFeatures' ... OK (hash=66101044)
< checking 'rmObjects' ... OK (hash=7905286422)
< checking 'getFeatures' ... OK (hash=1888331638)
---
> checking 'reenumerate' ... OK (hash=19465732150)
> checking 'hullFeatures' ... OK (hash=66098474)
> checking 'rmObjects' ... OK (hash=7905101794)
> checking 'getFeatures' ... OK (hash=1888295204)
391c391
< checking 'resize' ... OK (hash=1132892631)
---
> checking 'resize' ... OK (hash=1132892630)
407c407
< checking 'watershed' ... OK (hash=1307489112)
---
> checking 'watershed' ... OK (hash=1307435556)
419,423c419,423
< checking 'reenumerate' ... OK (hash=2596707508)
< checking 'hullFeatures' ... OK (hash=10278847)
< checking 'rmObjects' ... OK (hash=1189427050)
< checking 'getFeatures' ... OK (hash=337391651)
< checking 'paintObjects' ... OK (hash=224053428)
---
> checking 'reenumerate' ... OK (hash=2598340966)
> checking 'hullFeatures' ... OK (hash=10277746)
> checking 'rmObjects' ... OK (hash=1189373494)
> checking 'getFeatures' ... OK (hash=337376036)
> checking 'paintObjects' ... OK (hash=224055747)
OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'EBImage' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c EBImage.c -o EBImage.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c conversions.c -o conversions.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c display.c -o display.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c distmap.c -o distmap.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c drawable.c -o drawable.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c features_haralick.c -o features_haralick.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c features_hull.c -o features_hull.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c features_moments.c -o features_moments.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c features_zernike.c -o features_zernike.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c filters_magick.c -o filters_magick.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O2 -Wall -c floodFill.cpp -o floodFill.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c frameDist.c -o frameDist.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c io.c -o io.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c morphology.c -o morphology.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c normalize.c -o normalize.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c objects.c -o objects.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c ocontour.c -o ocontour.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O2 -Wall -c propagate.cpp -o propagate.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c thresh.c -o thresh.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c tile.c -o tile.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c tools.c -o tools.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O3 -Wall -std=gnu99 -c translate.c -o translate.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include" -g -O2 -DWIN32 -DUSE_GTK -DGLIB_GETTEXT -mms-bitfields -IC:/Progra~1/ImageMagick-6.4.4-Q16/include -IC:/GTK/include/gtk-2.0 -IC:/GTK/lib/gtk-2.0/include -IC:/GTK/include/atk-1.0 -IC:/GTK/include/cairo -IC:/GTK/include/pango-1.0 -IC:/GTK/include/glib-2.0 -IC:/GTK/lib/glib-2.0/include -IC:/GTK/include/libglade-2.0 -IC:/GTK/include/libxml2 -IC:/GTK/include -O2 -Wall -c watershed.cpp -o watershed.o
g++ -shared -s -o EBImage.dll tmp.def EBImage.o conversions.o display.o distmap.o drawable.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_magick.o floodFill.o frameDist.o io.o morphology.o normalize.o objects.o ocontour.o propagate.o thresh.o tile.o tools.o translate.o watershed.o -shared -LC:/Progra~1/ImageMagick-6.4.4-Q16 -lCORE_RL_magick_ -lCORE_RL_wand_ -LC:/GTK/lib -lgtk-win32-2.0 -lgdk-win32-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangowin32-1.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -lgdi32 -Le:/biocbld/bbs-2.5-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (EBImage)