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Package 299/319HostnameOS / ArchBUILDCHECKBUILD BIN
stam 1.12.0
Claudio Lottaz
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/stam
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: stam
Version: 1.12.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes stam_1.12.0.tar.gz
StartedAt: 2009-10-20 18:33:28 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:34:44 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 75.3 seconds
RetCode: 0
Status: OK
CheckDir: stam.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/stam.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'stam/DESCRIPTION' ... OK
* this is package 'stam' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'stam' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

stam.Rcheck/00install.out:

* Installing *source* package 'stam' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c util.c -o util.o
gcc -shared -s -o stam.dll tmp.def util.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: KEGG.db
** help
*** installing help indices
 >>> Building/Updating help pages for package 'stam'
     Formats: text html latex example chm 
  golubTrain.cv                     text    html    latex           chm
  golubTrain.fit                    text    html    latex           chm
  image.stamPrediction              text    html    latex           chm
  plot.stamCV                       text    html    latex           chm
  plot.stamFit                      text    html    latex           chm
  plot.stamPrediction               text    html    latex           chm
  stam-internal                     text    html    latex           chm
  stam.cv                           text    html    latex   example chm
  stam.evaluate                     text    html    latex   example chm
  stam.fit                          text    html    latex   example chm
  stam.graph.plot                   text    html    latex           chm
  stam.net                          text    html    latex   example chm
  stam.predict                      text    html    latex   example chm
  stam.rgb.colors                   text    html    latex   example chm
  stam.serve                        text    html    latex   example chm
  stam.writeHTML                    text    html    latex   example chm
  stamCV-class                      text    html    latex           chm
  stamEval-class                    text    html    latex           chm
  stamFit-class                     text    html    latex           chm
  stamINode-class                   text    html    latex           chm
  stamLeaf-class                    text    html    latex           chm
  stamNet-class                     text    html    latex           chm
  stamNode-class                    text    html    latex           chm
  stamPrediction-class              text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\STAM~1.RCH\00_PKG~1\stam\chm\stam.chm


Compile time: 0 minutes, 0 seconds
25	Topics
128	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\STAM~1.RCH\00_PKG~1\stam\chm\stam.chm, 54,805 bytes
Compression decreased file by 55,283 bytes.
** building package indices ...
Welcome to Structured Analysis of Microarrays

** MD5 sums
* DONE (stam)