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Package 289/319HostnameOS / ArchBUILDCHECKBUILD BIN
snpMatrix 1.8.0
David Clayton
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/snpMatrix
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: snpMatrix
Version: 1.8.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=snpMatrix.buildbin-libdir snpMatrix_1.8.0.tar.gz
StartedAt: 2009-10-20 19:16:56 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:17:37 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 41.2 seconds
RetCode: 0
Status: OK
PackageFile: snpMatrix_1.8.0.zip
PackageFileSize: 7.803 MiB

Command output

* Installing *source* package 'snpMatrix' ...

  Using auto-selected zip options '--use-zip-data --use-zip-help'

** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c adler32.c -o adler32.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c bind.c -o bind.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c compress.c -o compress.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c covwin.c -o covwin.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c crc32.c -o crc32.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c deflate.c -o deflate.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c force_hom.c -o force_hom.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c glm_test.c -o glm_test.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c glm_test_R.c -o glm_test_R.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c gzio.c -o gzio.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c hash_index.c -o hash_index.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c hphase.c -o hphase.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c ibs.c -o ibs.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c imputation.c -o imputation.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c in.c -o in.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c infback.c -o infback.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c inffast.c -o inffast.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c inflate.c -o inflate.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c inftrees.c -o inftrees.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c input.c -o input.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c invert.c -o invert.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c ld_graphic_eps.c -o ld_graphic_eps.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c ld_with.c -o ld_with.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c mla.c -o mla.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c outdata.c -o outdata.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c pairwise_linkage.c -o pairwise_linkage.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c read_chiamo.c -o read_chiamo.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c read_hapmap.c -o read_hapmap.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c read_pedfile.c -o read_pedfile.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c read_signals.c -o read_signals.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c readbed.c -o readbed.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c readped.c -o readped.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c sdfpw.c -o sdfpw.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c single_snp_tests.c -o single_snp_tests.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c snp_summary.c -o snp_summary.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c snpmpy.c -o snpmpy.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c solve_cubic.c -o solve_cubic.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c solve_quadratic.c -o solve_quadratic.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c structure.c -o structure.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c switch.c -o switch.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c tdt.c -o tdt.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c trees.c -o trees.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c uncompr.c -o uncompr.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c zutil.c -o zutil.o
gcc -shared -s -o snpMatrix.dll tmp.def adler32.o bind.o compress.o covwin.o crc32.o deflate.o force_hom.o glm_test.o glm_test_R.o gzio.o hash_index.o hphase.o ibs.o imputation.o in.o infback.o inffast.o inflate.o inftrees.o input.o invert.o ld_graphic_eps.o ld_with.o mla.o outdata.o pairwise_linkage.o read_chiamo.o read_hapmap.o read_pedfile.o read_signals.o readbed.o readped.o sdfpw.o single_snp_tests.o snp_summary.o snpmpy.o solve_cubic.o solve_quadratic.o structure.o switch.o tdt.o trees.o uncompr.o zutil.o -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: splines
Creating a new generic function for "plot" in "snpMatrix"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'snpMatrix'
     Formats: text html latex example chm 
  X.snp-class                       text    html    latex   example chm
  X.snp.matrix-class                text    html    latex   example chm
  chi.squared                       text    html    latex   example chm
  epsout.ld.snp                     text    html    latex   example chm
  families                          text    html    latex   example chm
  filter.rules                      text    html    latex   example chm
  for.exercise                      text    html    latex   example chm
  glm.test.control                  text    html    latex           chm
  ibs.stats                         text    html    latex   example chm
  ibsCount                          text    html    latex   example chm
  ibsDist                           text    html    latex   example chm
  imputation.maf                    text    html    latex   example chm
  impute.snps                       text    html    latex   example chm
  ld.snp                            text    html    latex   example chm
  ld.with                           text    html    latex   example chm
  misinherits                       text    html    latex   example chm
  pair.result.ld.snp                text    html    latex   example chm
  plot.snp.dprime                   text    html    latex   example chm
  pool                              text    html    latex   example chm
  pool2                             text    html    latex           chm
  qq.chisq                          text    html    latex   example chm
  read.HapMap.data                  text    html    latex   example chm
  read.pedfile.info                 text    html    latex           chm
  read.pedfile.map                  text    html    latex           chm
  read.plink                        text    html    latex           chm
  read.snps.chiamo                  text    html    latex   example chm
  read.snps.long                    text    html    latex           chm
  read.snps.pedfile                 text    html    latex           chm
  read.wtccc.signals                text    html    latex   example chm
  row.summary                       text    html    latex   example chm
  single.snp.tests                  text    html    latex   example chm
  snp-class                         text    html    latex   example chm
  snp.cbind                         text    html    latex   example chm
  snp.cor                           text    html    latex   example chm
  snp.dprime-class                  text    html    latex   example chm
  snp.imputation                    text    html    latex   example chm
  snp.lhs.tests                     text    html    latex   example chm
  snp.matrix-class                  text    html    latex   example chm
  snp.pre                           text    html    latex   example chm
  snp.reg.imputation-class          text    html    latex   example chm
  snp.rhs.tests                     text    html    latex   example chm
  snp.tests.glm-class               text    html    latex   example chm
  snp.tests.single-class            text    html    latex   example chm
  snpMatrix-internal                text    html    latex           chm
  snpMatrix-package                 text    html    latex           chm
  switch.alleles                    text    html    latex   example chm
  tdt.snp                           text    html    latex   example chm
  test.allele.switch                text    html    latex   example chm
  testdata                          text    html    latex   example chm
  write.snp.matrix                  text    html    latex           chm
  wtccc.sample.list                 text    html    latex           chm
  xxt                               text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpwDb41y\R.INSTALL678418be\snpMatrix\chm\snpMatrix.chm





Compile time: 0 minutes, 3 seconds

53	Topics

397	Local links

26	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpwDb41y\R.INSTALL678418be\snpMatrix\chm\snpMatrix.chm, 119,336 bytes

Compression decreased file by 145,798 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'snpMatrix' as snpMatrix_1.8.0.zip
* DONE (snpMatrix)