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Package 240/319HostnameOS / ArchBUILDCHECKBUILD BIN
quantsmooth 1.10.0
Jan Oosting
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/quantsmooth
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: quantsmooth
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes quantsmooth_1.10.0.tar.gz
StartedAt: 2009-10-20 18:34:46 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:35:21 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 34.8 seconds
RetCode: 0
Status: OK
CheckDir: quantsmooth.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/quantsmooth.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'quantsmooth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quantsmooth' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'quantsmooth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
grid.chromosome: no visible binding for global variable ‘chrom.bands’
lengthChromosome: no visible binding for global variable ‘chrom.bands’
paintCytobands: no visible binding for global variable ‘chrom.bands’
position2Cytoband: no visible binding for global variable ‘chrom.bands’
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

quantsmooth.Rcheck/00install.out:

* Installing *source* package ‘quantsmooth’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SparseM
Package SparseM (0.80) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 


Attaching package: 'quantreg'


	The following object(s) are masked from package:utils :

	 vignette 

Loading required package: grid
** help
*** installing help indices
 >>> Building/Updating help pages for package 'quantsmooth'
     Formats: text html latex example 
  Chromosome14                      text    html    latex
  drawSimpleChrom                   text    html    latex   example
  getChangedIdx                     text    html    latex
  getChangedRegions                 text    html    latex   example
  getLambdaMin                      text    html    latex   example
  grid.chromosome                   text    html    latex   example
  lengthChromosome                  text    html    latex   example
  numericCHR                        text    html    latex   example
  paintCytobands                    text    html    latex   example
  plotChromosome                    text    html    latex
  plotSmoothed                      text    html    latex   example
  position2Cytoband                 text    html    latex   example
  prepareGenomePlot                 text    html    latex
  quantsmooth                       text    html    latex   example
  quantsmooth.cv                    text    html    latex   example
  quantsmooth.seg                   text    html    latex   example
  scaleto                           text    html    latex
** building package indices ...
* DONE (quantsmooth)