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Package 239/319HostnameOS / ArchBUILDCHECKBUILD BIN
qpgraph 1.0.0
Robert Castelo
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/qpgraph
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: qpgraph
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes qpgraph_1.0.0.tar.gz
StartedAt: 2009-10-20 18:38:34 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:42:50 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 255.8 seconds
RetCode: 0
Status: OK
CheckDir: qpgraph.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/qpgraph.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'qpgraph/DESCRIPTION' ... OK
* this is package 'qpgraph' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'qpgraph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

qpgraph.Rcheck/00install.out:

* Installing *source* package ‘qpgraph’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin8.11.1
checking host system type... i686-apple-darwin8.11.1
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I/usr/local/include   -mtune=core2 -g -O2 -Wall -pedantic -fPIC  -mtune=core2 -g -O2 -c cliquer.c -o cliquer.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I/usr/local/include   -mtune=core2 -g -O2 -Wall -pedantic -fPIC  -mtune=core2 -g -O2 -c graph.c -o graph.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I/usr/local/include   -mtune=core2 -g -O2 -Wall -pedantic -fPIC  -mtune=core2 -g -O2 -c qpgraph.c -o qpgraph.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I/usr/local/include   -mtune=core2 -g -O2 -Wall -pedantic -fPIC  -mtune=core2 -g -O2 -c reorder.c -o reorder.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Versions/2.9/Resources/lib/i386 -lRblas -L/Library/Frameworks/R.framework/Versions/2.9/Resources/lib/i386 -lRlapack -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'qpgraph'
     Formats: text html latex example 
  EcoliOxygen                       text    html    latex   example
  qpAnyGraph                        text    html    latex   example
  qpAvgNrr                          text    html    latex   example
  qpCItest                          text    html    latex   example
  qpClique                          text    html    latex   example
  qpCliqueNumber                    text    html    latex   example
  qpDscale                          text    html    latex   example
  qpEdgeNrr                         text    html    latex   example
  qpFunctionalCoherence             text    html    latex   example
  qpGetCliques                      text    html    latex   example
  qpGraph                           text    html    latex   example
  qpGraphDensity                    text    html    latex   example
  qpHist                            text    html    latex   example
  qpI2K                             text    html    latex   example
  qpIPF                             text    html    latex   example
  qpImportNrr                       text    html    latex
  qpK2R                             text    html    latex   example
  qpNrr                             text    html    latex   example
  qpPAC                             text    html    latex   example
  qpPCC                             text    html    latex   example
  qpPRscoreThreshold                text    html    latex   example
  qpPrecisionRecall                 text    html    latex   example
  qpRndGraph                        text    html    latex   example
  qpSampleMvnorm                    text    html    latex   example
  qpgraph-package                   text    html    latex
** building package indices ...
* DONE (qpgraph)