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Package 220/319HostnameOS / ArchBUILDCHECKBUILD BIN
pcaMethods 1.22.0
Wolfram Stacklies
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/pcaMethods
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: pcaMethods
Version: 1.22.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes pcaMethods_1.22.0.tar.gz
StartedAt: 2009-10-20 18:27:59 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:33:22 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 322.9 seconds
RetCode: 0
Status: OK
CheckDir: pcaMethods.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/pcaMethods.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'pcaMethods/DESCRIPTION' ... OK
* this is package 'pcaMethods' version '1.22.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pcaMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

pcaMethods.Rcheck/00install.out:

* Installing *source* package ‘pcaMethods’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'pls'


	The following object(s) are masked from package:stats :

	 loadings 

Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "biplot" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "fitted" in "pcaMethods"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'pcaMethods'
     Formats: text html latex example 
  Q2                                text    html    latex   example
  asExprSet                         text    html    latex
  biplot.pcaRes                     text    html    latex   example
  bpca                              text    html    latex   example
  checkData                         text    html    latex
  class.nlpcaNet                    text    html    latex
  class.nniRes                      text    html    latex
  class.pcaRes                      text    html    latex
  fitted.pcaRes                     text    html    latex   example
  helix                             text    html    latex
  kEstimate                         text    html    latex   example
  kEstimateFast                     text    html    latex   example
  leverage                          text    html    latex   example
  llsImpute                         text    html    latex   example
  metaboliteData                    text    html    latex
  metaboliteDataComplete            text    html    latex
  nipalsPca                         text    html    latex   example
  nlpca                             text    html    latex   example
  nni                               text    html    latex   example
  pca                               text    html    latex   example
  plotPcs                           text    html    latex   example
  plotR2                            text    html    latex
  ppca                              text    html    latex   example
  predict.pcaRes                    text    html    latex   example
  prep                              text    html    latex   example
  residuals.pcaRes                  text    html    latex   example
  robustPca                         text    html    latex   example
  robustSvd                         text    html    latex   example
  slplot                            text    html    latex   example
  svdImpute                         text    html    latex   example
  svdPca                            text    html    latex   example
** building package indices ...
* DONE (pcaMethods)