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Package 212/319HostnameOS / ArchBUILDCHECKBUILD BIN
ontoTools 1.22.0
Vince Carey
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/ontoTools
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: ontoTools
Version: 1.22.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=ontoTools.buildbin-libdir ontoTools_1.22.0.tar.gz
StartedAt: 2009-10-20 19:08:50 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:09:28 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 37.6 seconds
RetCode: 0
Status: OK
PackageFile: ontoTools_1.22.0.zip
PackageFileSize: 3.558 MiB

Command output

* Installing *source* package 'ontoTools' ...

  Using auto-selected zip options '--use-zip-data '

** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Package SparseM (0.80) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

Loading required package: DBI
Creating a generic for "colSums" in package  "ontoTools"
    (the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a generic for "rowSums" in package  "ontoTools"
    (the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a new generic function for "grep" in "ontoTools"
In method for function "grep": expanding the signature to include
omitted arguments in definition: invert = "missing"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'ontoTools'
     Formats: text html latex example chm 
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  GDI                               text    html    latex   example chm
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  STMA                              text    html    latex   example chm
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  accessMat                         text    html    latex           chm
  buildGOgraph                      text    html    latex   example chm
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  compoundGraph-class               text    html    latex           chm
  depthStruct                       text    html    latex   example chm
  gomfAmat                          text    html    latex           chm
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  litOnto                           text    html    latex           chm
  namedSparse-class                 text    html    latex   example chm
  ontology-class                    text    html    latex   example chm
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  otkvEnv2namedSparse               text    html    latex   example chm
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  semsim                            text    html    latex   example chm
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Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\Rtmp87xnZL\R.INSTALL678418be\ontoTools\chm\ontoTools.chm





Compile time: 0 minutes, 2 seconds

21	Topics

180	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\Rtmp87xnZL\R.INSTALL678418be\ontoTools\chm\ontoTools.chm, 43,884 bytes

Compression decreased file by 62,482 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'ontoTools' as ontoTools_1.22.0.zip
* DONE (ontoTools)