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Package 211/319HostnameOS / ArchBUILDCHECKBUILD BIN
oneChannelGUI 1.10.11
Raffaele A Calogero
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/oneChannelGUI
Last Changed Rev: 42379 / Revision: 42512
Last Changed Date: 2009-10-14 01:12:40 -0700 (Wed, 14 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: oneChannelGUI
Version: 1.10.11
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes oneChannelGUI_1.10.11.tar.gz
StartedAt: 2009-10-20 18:24:27 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:39:43 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 916.2 seconds
RetCode: 0
Status: OK
CheckDir: oneChannelGUI.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/oneChannelGUI.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'oneChannelGUI/DESCRIPTION' ... OK
* this is package 'oneChannelGUI' version '1.10.11'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oneChannelGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.GetContrasts: no visible binding for global variable
  ‘affylmGUIenvironment’
.GetContrasts: no visible global function definition for ‘limmaExon’
.aptDir: no visible binding for global variable ‘.affylmGUIglobals’
.consistentFilter: no visible binding for global variable
  ‘.affylmGUIglobals’
.consistentFilter: no visible binding for global variable
  ‘affylmGUIenvironment’
.consistentFilter : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
.consistentFilter : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
.downloadLibs: no visible binding for global variable
  ‘.affylmGUIglobals’
.downloadLibs: no visible binding for global variable
  ‘affylmGUIenvironment’
.exonTopTable: no visible binding for global variable
  ‘affylmGUIenvironment’
.gettingEG: no visible binding for global variable
  ‘affylmGUIenvironment’
.pamr.confusion.mod: no visible binding for global variable
  ‘which.is.max’
.rawpCheckExons: no visible binding for global variable
  ‘affylmGUIenvironment’
.rawpCheckExons: no visible binding for global variable
  ‘.affylmGUIglobals’
AptMidas: no visible binding for global variable ‘affylmGUIenvironment’
AptMidas: no visible binding for global variable ‘.affylmGUIglobals’
AptMidas: no visible binding for global variable ‘tmp’
AptMidas: no visible binding for global variable ‘tt’
ComputeContrasts: no visible binding for global variable
  ‘affylmGUIenvironment’
ComputeLinearModelFit: no visible binding for global variable
  ‘affylmGUIenvironment’
ComputeLinearModelFit: no visible binding for global variable
  ‘.affylmGUIglobals’
EG2probeset: no visible binding for global variable ‘.affylmGUIglobals’
EG2probeset: no visible binding for global variable
  ‘affylmGUIenvironment’
EG2probeset : OpenAFile: no visible binding for global variable
  ‘.affylmGUIglobals’
ExportNormalizedExpressionValues: no visible binding for global
  variable ‘affylmGUIenvironment’
ExportNormalizedExpressionValues1: no visible binding for global
  variable ‘affylmGUIenvironment’
ExportfeatureNames: no visible binding for global variable
  ‘affylmGUIenvironment’
GOenrichment: no visible binding for global variable
  ‘.affylmGUIglobals’
GOenrichment: no visible binding for global variable
  ‘affylmGUIenvironment’
GOenrichment : onOK: no visible binding for '<<-' assignment to
  ‘ReturnVal’
GOenrichment : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GOenrichment : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
GOenrichment : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
GOenrichment: no visible binding for global variable ‘ReturnVal’
GOenrichment : OpenAFile: no visible binding for global variable
  ‘.affylmGUIglobals’
GetNormalizationMethod: no visible binding for global variable
  ‘.affylmGUIglobals’
GetNormalizationMethod : onCancel: no visible binding for global
  variable ‘.affylmGUIglobals’
GetNormalizationMethod : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
GetNormalizationMethod : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
IPAlistFilter: no visible binding for global variable
  ‘affylmGUIenvironment’
IPAlistFilter: no visible binding for global variable
  ‘.affylmGUIglobals’
ML.edesign: no visible binding for global variable
  ‘affylmGUIenvironment’
ML.edesign: no visible binding for global variable ‘.affylmGUIglobals’
ML.edesign : onClose: no visible binding for global variable
  ‘.affylmGUIglobals’
ML.edesign : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
NewLimmaFile: no visible binding for global variable
  ‘affylmGUIenvironment’
NormalizeNow: no visible binding for global variable
  ‘affylmGUIenvironment’
NormalizeNow: no visible binding for global variable
  ‘.affylmGUIglobals’
OpenAFile: no visible binding for global variable ‘.affylmGUIglobals’
OpenAGeoFile: no visible binding for global variable
  ‘.affylmGUIglobals’
OpenAGeoFile: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenALimmaFile: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenBeadStudioFiles : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenBeadStudioFiles: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenCDFandTargetsfiles : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenCDFandTargetsfiles: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenExonandTargetsfiles : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenExonandTargetsfiles: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenExonandTargetsfiles: no visible binding for '<<-' assignment to
  ‘ReturnValX’
OpenExonandTargetsfiles : onOK: no visible binding for '<<-' assignment
  to ‘ReturnValX’
OpenExonandTargetsfiles: no visible binding for global variable
  ‘ReturnValX’
OpenGeoFiles : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenGeoFiles: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenGeoFiles: no visible binding for global variable ‘geoVSbioc’
OpenLargefiles : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
OpenLargefiles: no visible binding for global variable
  ‘affylmGUIenvironment’
PlotOptionsv1: no visible binding for global variable
  ‘.affylmGUIglobals’
PlotOptionsv1 : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
PlotOptionsv1 : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
SaveAsLimmaFile: no visible binding for global variable
  ‘affylmGUIenvironment’
SaveAsLimmaFile: no visible binding for global variable
  ‘.affylmGUIglobals’
SetED: no visible binding for global variable ‘.affylmGUIglobals’
VennDiagram: no visible binding for global variable ‘.affylmGUIglobals’
VennDiagram : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
VennDiagram : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
VennDiagram : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
VennDiagram: no visible binding for global variable
  ‘affylmGUIenvironment’
VennDiagram : plotFunction: no visible binding for global variable
  ‘include’
VennDiagram: no visible global function definition for ‘tkrplot’
addAnnLib: no visible binding for global variable
  ‘affylmGUIenvironment’
addAnnLib: no visible binding for global variable ‘.affylmGUIglobals’
addAnnLib : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
addAnnLib : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
addAnnLib : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
affyPlotMA: no visible binding for global variable
  ‘affylmGUIenvironment’
affyPlotMA: no visible binding for global variable ‘.affylmGUIglobals’
affyPlotMA : plotFunction: no visible binding for global variable
  ‘.affylmGUIglobals’
affyPlotMA : CopyToClip: no visible global function definition for
  ‘tkrreplot’
affyPlotMA: no visible global function definition for ‘tkrplot’
aptFolder: no visible binding for global variable ‘.affylmGUIglobals’
aptFolder: no visible binding for global variable
  ‘affylmGUIenvironment’
biomartFilter: no visible binding for global variable
  ‘.affylmGUIglobals’
buildingLocalAnnotation: no visible binding for global variable
  ‘.affylmGUIglobals’
buildingLocalAnnotation : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
buildingLocalAnnotation : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
buildingLocalAnnotation: no visible binding for global variable
  ‘affylmGUIenvironment’
buildingLocalAnnotation : onOK: no visible binding for '<<-' assignment
  to ‘ReturnNetaffx’
buildingLocalAnnotation : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
buildingLocalAnnotation : onCancel: no visible binding for global
  variable ‘.affylmGUIglobals’
buildingLocalAnnotation: no visible binding for global variable
  ‘ReturnNetaffx’
changeMenu: no visible binding for global variable
  ‘affylmGUIenvironment’
changeMenu: no visible binding for global variable ‘.affylmGUIglobals’
chooseEDir: no visible binding for global variable ‘.affylmGUIglobals’
colExtract: no visible binding for global variable ‘.affylmGUIglobals’
colExtract : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
colExtract : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
colExtract : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
colExtract: no visible binding for global variable
  ‘affylmGUIenvironment’
combineGeoMSF: no visible binding for global variable
  ‘.affylmGUIglobals’
combineGeoMSF : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
combineGeoMSF : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
combineGeoMSF: no visible binding for global variable
  ‘affylmGUIenvironment’
consistentFilters: no visible binding for global variable
  ‘.affylmGUIglobals’
consistentFilters: no visible binding for global variable
  ‘affylmGUIenvironment’
consistentFilters : onOK: no visible binding for '<<-' assignment to
  ‘ReturnFilter’
consistentFilters : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
consistentFilters : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
consistentFilters : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
consistentFilters: no visible binding for global variable
  ‘ReturnFilter’
consistentFilters : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
cosieWrapper: no visible binding for global variable
  ‘affylmGUIenvironment’
cosieWrapper: no visible binding for global variable
  ‘.affylmGUIglobals’
createGeoTarget: no visible binding for global variable
  ‘.affylmGUIglobals’
crosshybFilter: no visible binding for global variable
  ‘affylmGUIenvironment’
crosshybFilter: no visible binding for global variable
  ‘.affylmGUIglobals’
crosshybFilter : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
crosshybFilter : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
crosshybFilter : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
dabgFilter: no visible binding for global variable
  ‘affylmGUIenvironment’
dabgFilter: no visible binding for global variable ‘.affylmGUIglobals’
dabgFilter : onOK: no visible binding for '<<-' assignment to
  ‘ReturnVal’
dabgFilter : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
dabgFilter : onCancel: no visible binding for '<<-' assignment to
  ‘ReturnVal’
dabgFilter : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
dabgFilter : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
dabgFilter: no visible binding for global variable ‘ReturnVal’
delete.ML: no visible binding for global variable
  ‘affylmGUIenvironment’
delete.ML: no visible binding for global variable ‘.affylmGUIglobals’
deleteLocalData: no visible binding for global variable
  ‘.affylmGUIglobals’
dfMAplot: no visible binding for global variable ‘.affylmGUIglobals’
dfMAplot : onOK: no visible binding for '<<-' assignment to ‘ReturnVal’
dfMAplot : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
dfMAplot : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
dfMAplot : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
dfMAplot: no visible binding for global variable ‘ReturnVal’
erankProdAltSpl: no visible binding for global variable
  ‘affylmGUIenvironment’
erankProdAltSpl: no visible binding for global variable
  ‘.affylmGUIglobals’
erankProdAltSpl : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
erankProdAltSpl : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
erankProdAltSpl : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
erankProdAltSpl: no visible binding for '<<-' assignment to ‘ReturnVal’
erankProdAltSpl : onOK: no visible binding for '<<-' assignment to
  ‘ReturnVal’
erankProdAltSpl: no visible binding for global variable ‘ReturnVal’
erankProdAltSplFilter: no visible binding for global variable
  ‘affylmGUIenvironment’
erankProdAltSplFilter: no visible binding for global variable
  ‘.affylmGUIglobals’
erankProdAltSplFilter : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
erankProdAltSplFilter : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
exonContrasts: no visible binding for global variable
  ‘affylmGUIenvironment’
exonTopTableExtract: no visible binding for global variable
  ‘affylmGUIenvironment’
exonTopTableExtract: no visible binding for global variable
  ‘.affylmGUIglobals’
exonTopTableExtract : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
exonTopTableExtract : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
exonsSpecific2as: no visible binding for global variable
  ‘.affylmGUIglobals’
exonsSpecific2as: no visible binding for global variable
  ‘affylmGUIenvironment’
extractAffyids: no visible binding for global variable
  ‘.affylmGUIglobals’
extractAffyids: no visible binding for global variable
  ‘affylmGUIenvironment’
extractAffyids : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
extractAffyids : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
extractAffyids : OpenAFile: no visible binding for global variable
  ‘.affylmGUIglobals’
filteringTable: no visible binding for global variable
  ‘.affylmGUIglobals’
geneExonLibs: no visible binding for global variable
  ‘affylmGUIenvironment’
geneExonLibs: no visible binding for global variable
  ‘.affylmGUIglobals’
initialize.extAffylmGUI: no visible binding for global variable
  ‘affylmGUIenvironment’
initialize.extAffylmGUI: no visible binding for global variable
  ‘.affylmGUIglobals’
inspecting.one.splice.index: no visible binding for global variable
  ‘.affylmGUIglobals’
inspecting.one.splice.index: no visible binding for global variable
  ‘affylmGUIenvironment’
inspecting.one.splice.index : onOK: no visible binding for global
  variable ‘affylmGUIenvironment’
inspecting.one.splice.index : <anonymous>: no visible binding for
  global variable ‘.affylmGUIglobals’
inspecting.splice.index: no visible binding for global variable
  ‘.affylmGUIglobals’
inspecting.splice.index: no visible binding for global variable
  ‘affylmGUIenvironment’
intensityFilter: no visible binding for global variable
  ‘.affylmGUIglobals’
intensityFilter : onOK: no visible binding for '<<-' assignment to
  ‘ReturnVal’
intensityFilter : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
intensityFilter : onCancel: no visible binding for '<<-' assignment to
  ‘ReturnVal’
intensityFilter : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
intensityFilter : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
intensityFilter: no visible binding for global variable ‘ReturnVal’
intronicBg: no visible binding for global variable
  ‘affylmGUIenvironment’
intronicBg: no visible binding for global variable ‘.affylmGUIglobals’
intronicBg : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
intronicBg : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
intronicBg : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
iqrFilter: no visible binding for global variable ‘.affylmGUIglobals’
iqrFilter : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
iqrFilter : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
iqrFilter : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
largedatasetNorm: no visible binding for global variable
  ‘affylmGUIenvironment’
largedatasetNorm: no visible binding for global variable
  ‘.affylmGUIglobals’
largedatasetNorm : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
largedatasetNorm : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
largedatasetNorm : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
libraryFilesDir: no visible binding for global variable
  ‘.affylmGUIglobals’
limmaExons: no visible binding for global variable
  ‘affylmGUIenvironment’
limmaExons: no visible binding for global variable ‘.affylmGUIglobals’
listFilter: no visible binding for global variable
  ‘affylmGUIenvironment’
listFilter: no visible binding for global variable ‘.affylmGUIglobals’
listFilter : OpenAFile: no visible binding for global variable
  ‘.affylmGUIglobals’
makeBED15: no visible binding for global variable ‘.affylmGUIglobals’
mapping2RefSeq: no visible binding for global variable
  ‘.affylmGUIglobals’
mapping2RefSeq: no visible binding for global variable
  ‘affylmGUIenvironment’
mapping2ensembl: no visible binding for global variable
  ‘.affylmGUIglobals’
mapping2ensembl: no visible binding for global variable
  ‘affylmGUIenvironment’
mapping2ensembl: no visible binding for global variable
  ‘crosshybhuex.annotation’
mapping2ensembl: no visible binding for global variable
  ‘crosshybmoex.annotation’
mapping2ensembl: no visible binding for global variable
  ‘crosshybraex.annotation’
mapping2exon: no visible binding for global variable
  ‘.affylmGUIglobals’
mapping2exon: no visible binding for global variable
  ‘affylmGUIenvironment’
masigpro: no visible binding for global variable ‘affylmGUIenvironment’
masigpro: no visible binding for global variable ‘.affylmGUIglobals’
masigpro : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro.edesign: no visible binding for global variable
  ‘affylmGUIenvironment’
masigpro.edesign: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro.edesign : onClose: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro.edesign : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro.view: no visible binding for global variable
  ‘affylmGUIenvironment’
masigpro.view: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro.view : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro.view : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro.view : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
masigpro.view : plotFunction: no visible binding for global variable
  ‘include’
masigpro.view: no visible global function definition for ‘tkrplot’
masigpro.view : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
metaArrayIC: no visible binding for global variable
  ‘affylmGUIenvironment’
metaArrayIC: no visible binding for global variable ‘.affylmGUIglobals’
metaArrayMerge : OpenAFile: no visible binding for global variable
  ‘.affylmGUIglobals’
metaArrayMerge: no visible binding for global variable
  ‘affylmGUIenvironment’
metaArrayMerge: no visible binding for global variable
  ‘.affylmGUIglobals’
metaArrayMerge : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
metaArrayMerge : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
metaArrayMerge : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
midasFilter: no visible binding for global variable
  ‘affylmGUIenvironment’
midasFilter: no visible binding for global variable ‘.affylmGUIglobals’
midasFilter : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
midasFilter : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
myExpresso: no visible binding for global variable
  ‘affylmGUIenvironment’
myExpresso: no visible binding for global variable ‘.affylmGUIglobals’
normBoxplot: no visible binding for global variable
  ‘affylmGUIenvironment’
normBoxplot: no visible binding for global variable ‘.affylmGUIglobals’
ocPlotHist: no visible binding for global variable
  ‘affylmGUIenvironment’
ocPlotHist: no visible binding for global variable ‘.affylmGUIglobals’
ocPlotHist : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
ocPlotHist : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
ocPlotHist : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
ocPlotPCA: no visible binding for global variable
  ‘affylmGUIenvironment’
ocPlotPCA: no visible binding for global variable ‘.affylmGUIglobals’
ocPlotPCA : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
ocPlotPCA : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
ocPlotPCA : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
oneChannelGUI: no visible binding for global variable
  ‘affylmGUIenvironment’
oneChannelGUI: no visible binding for global variable
  ‘.affylmGUIglobals’
plierToZero: no visible binding for global variable
  ‘affylmGUIenvironment’
plierToZero: no visible binding for global variable ‘.affylmGUIglobals’
plotGO: no visible binding for global variable ‘affylmGUIenvironment’
plotGO: no visible binding for global variable ‘.affylmGUIglobals’
plotGO : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
plotGO : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
plotGO : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
plotGO : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
plotVariantSI: no visible binding for global variable
  ‘.affylmGUIglobals’
plotVariantSI : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
plotVariantSI : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
plotVariantSI : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
plotVariantSI: no visible binding for global variable
  ‘affylmGUIenvironment’
rankProd: no visible binding for global variable ‘affylmGUIenvironment’
rankProd: no visible binding for global variable ‘.affylmGUIglobals’
rankProd : onOK: no visible binding for '<<-' assignment to ‘ReturnVal’
rankProd : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
rankProd : onCancel: no visible binding for '<<-' assignment to
  ‘ReturnVal’
rankProd : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
rankProd : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
rankProd: no visible binding for global variable ‘ReturnVal’
rankingConversion: no visible binding for global variable
  ‘affylmGUIenvironment’
rankingConversion: no visible binding for global variable
  ‘.affylmGUIglobals’
rawBoxplotPN: no visible binding for global variable
  ‘affylmGUIenvironment’
rawBoxplotPN: no visible binding for global variable
  ‘.affylmGUIglobals’
rawpCheck: no visible binding for global variable
  ‘affylmGUIenvironment’
rawpCheck: no visible binding for global variable ‘.affylmGUIglobals’
recoverUnfiltered: no visible binding for global variable
  ‘.affylmGUIglobals’
recoverUnfiltered: no visible binding for global variable
  ‘affylmGUIenvironment’
recoverUnfiltered: no visible binding for global variable ‘x.exon’
refseqDownload: no visible binding for global variable
  ‘.affylmGUIglobals’
refseqDownload: no visible binding for global variable
  ‘affylmGUIenvironment’
retrievePSRseq: no visible binding for global variable
  ‘.affylmGUIglobals’
retrievePSRseq: no visible binding for global variable
  ‘affylmGUIenvironment’
reviqrFilter: no visible binding for global variable
  ‘.affylmGUIglobals’
reviqrFilter : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
reviqrFilter : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
reviqrFilter : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
runningJetta: no visible binding for global variable
  ‘.affylmGUIglobals’
runningJetta: no visible binding for global variable
  ‘affylmGUIenvironment’
runningJetta: no visible binding for global variable ‘tmp’
runningJetta : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
runningJetta : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
runningJetta : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
runningJetta : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
runningJetta: no visible global function definition for ‘jetta.do.mads’
runningJetta: no visible global function definition for
  ‘jetta.read.expression’
runningJetta: no visible global function definition for
  ‘jetta.read.mads.output’
sample.size.evaluation: no visible binding for global variable
  ‘affylmGUIenvironment’
sample.size.evaluation: no visible binding for global variable
  ‘.affylmGUIglobals’
sample.size.evaluation : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
sample.size.evaluation : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
sample.size.evaluation : common.sd: no visible binding for global
  variable ‘affylmGUIenvironment’
sample.size.evaluation : onCancel: no visible binding for global
  variable ‘.affylmGUIglobals’
sample.size.evaluation : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
sample.size.evaluation1: no visible binding for global variable
  ‘affylmGUIenvironment’
sample.size.evaluation1: no visible binding for global variable
  ‘.affylmGUIglobals’
sample.size.evaluation1 : onCancel: no visible binding for global
  variable ‘.affylmGUIglobals’
sample.size.evaluation1 : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
sample.size.evaluation1 : <anonymous>: no visible binding for global
  variable ‘.affylmGUIglobals’
sample.size.evaluation1 : common.sd: no visible binding for global
  variable ‘affylmGUIenvironment’
showDataset: no visible binding for global variable
  ‘affylmGUIenvironment’
showTopTable: no visible binding for global variable
  ‘affylmGUIenvironment’
showTopTable: no visible binding for global variable ‘annlib’
siggenes: no visible binding for global variable ‘affylmGUIenvironment’
siggenes: no visible binding for global variable ‘.affylmGUIglobals’
siggenes : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
siggenes : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
simFilter: no visible binding for global variable ‘.affylmGUIglobals’
simFilter : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
spliceIndex: no visible binding for global variable
  ‘affylmGUIenvironment’
spliceIndex: no visible binding for global variable ‘.affylmGUIglobals’
templA: no visible binding for global variable ‘affylmGUIenvironment’
templA: no visible binding for global variable ‘.affylmGUIglobals’
templA : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
templA : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
templA : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
trainTest: no visible binding for global variable
  ‘affylmGUIenvironment’
trainTest: no visible binding for global variable ‘.affylmGUIglobals’
trainTest : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
trainTest : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
trainTest : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
trainTest: possible error in Try(x = exprs(testAffyData)): unused
  argument(s) (x = exprs(testAffyData))
trainTest : onOK: no visible binding for global variable
  ‘affylmGUIenvironment’
updateLibs: no visible binding for global variable ‘.affylmGUIglobals’
updateLibs: no visible global function definition for
  ‘biocinstallRepos’
variantExons: no visible binding for global variable
  ‘.affylmGUIglobals’
variantSI: no visible binding for global variable ‘.affylmGUIglobals’
variantSI: no visible binding for global variable
  ‘affylmGUIenvironment’
whichKindOfArray: no visible binding for global variable
  ‘affylmGUIenvironment’
whichKindOfArray: no visible binding for '<<-' assignment to
  ‘ReturnVal’
whichKindOfArray: no visible binding for global variable
  ‘.affylmGUIglobals’
whichKindOfArray : onOK: no visible binding for '<<-' assignment to
  ‘ReturnVal’
whichKindOfArray : onOK: no visible binding for global variable
  ‘.affylmGUIglobals’
whichKindOfArray : onCancel: no visible binding for global variable
  ‘.affylmGUIglobals’
whichKindOfArray : <anonymous>: no visible binding for global variable
  ‘.affylmGUIglobals’
whichKindOfArray: no visible binding for global variable ‘ReturnVal’
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

oneChannelGUI.Rcheck/00install.out:

* Installing *source* package ‘oneChannelGUI’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: affy
Loading required package: affyio
Loading required package: widgetTools
Loading required package: DynDoc
Loading required package: tools
Loading required package: Category
Loading required package: AnnotationDbi
Loading required package: graph
Loading required package: DBI
** help
*** installing help indices
 >>> Building/Updating help pages for package 'oneChannelGUI'
     Formats: text html latex example 
  AptMidas                          text    html    latex
  EG2probeset                       text    html    latex
  GOenrichment                      text    html    latex
  IPAlistFilter                     text    html    latex
  ML.edesign                        text    html    latex
  OpenBeadStudioFiles               text    html    latex
  OpenLargefiles                    text    html    latex
  PlotOptionsv1                     text    html    latex
  VennDiagram                       text    html    latex
  biomartFilter                     text    html    latex
  buildingLocalAnnotation           text    html    latex
  colExtract                        text    html    latex
  combineGeoMSF                     text    html    latex
  consistentFilters                 text    html    latex
  cosieHscore                       text    html    latex
  cosieHsfull                       text    html    latex
  cosieMmcore                       text    html    latex
  cosieMmfull                       text    html    latex
  cosieWrapper                      text    html    latex
  createGeoTarget                   text    html    latex
  crosshybFilter                    text    html    latex
  crosshybhuex.annotation           text    html    latex
  crosshybmoex.annotation           text    html    latex
  crosshybraex.annotation           text    html    latex
  dfMAplot                          text    html    latex
  erankProdAltSpl                   text    html    latex
  erankProdAltSplFilterl            text    html    latex
  exonContrasts                     text    html    latex
  exonTopTableExtract               text    html    latex
  exonsSpecific2as                  text    html    latex
  extractAffyids                    text    html    latex
  filteringTable                    text    html    latex
  geneExonLibs                      text    html    latex
  geoVSbioc                         text    html    latex
  huex.annotation                   text    html    latex
  huex.variantexons                 text    html    latex
  hugene.annotation                 text    html    latex
  inspecting.one.splice.index       text    html    latex
  inspecting.splice.index           text    html    latex
  intensityFilter                   text    html    latex
  iqrFilter                         text    html    latex
  limmaExons                        text    html    latex
  listFilter                        text    html    latex
  makeBED15                         text    html    latex
  mapping2RefSeq                    text    html    latex
  mapping2ensembl                   text    html    latex
  mapping2exon                      text    html    latex
  masigpro                          text    html    latex
  masigpro.edesign                  text    html    latex
  masigpro.view                     text    html    latex
  metaArrayIC                       text    html    latex
  metaArrayMerge                    text    html    latex
  moex.annotation                   text    html    latex
  moex.variantexons                 text    html    latex
  mogene.annotation                 text    html    latex
  myExpresso                        text    html    latex
  normBoxplot                       text    html    latex
  ocPlotHist                        text    html    latex
  ocPlotPCA                         text    html    latex
  oneChannelGUI-package             text    html    latex   example
  oneChannelGUI                     text    html    latex   example
  plierToZero                       text    html    latex
  plotGO                            text    html    latex
  plotVariantSI                     text    html    latex
  raex.annotation                   text    html    latex
  raex.variantexons                 text    html    latex
  ragene.annotation                 text    html    latex
  rankProd                          text    html    latex
  rankingConversion                 text    html    latex
  rawBoxplotPN                      text    html    latex
  rawpCheck                         text    html    latex
  refseqDownload                    text    html    latex
  retrievePSRseq                    text    html    latex
  reviqrFilter                      text    html    latex
  runningJetta                      text    html    latex
  sample.size.evaluation            text    html    latex
  sample.size.evaluation1           text    html    latex
  showDataset                       text    html    latex
  showTopTable                      text    html    latex
  siggenes                          text    html    latex
  simFilter                         text    html    latex
  spliceIndex                       text    html    latex
  targetWidget                      text    html    latex
  templA                            text    html    latex
  trainTest                         text    html    latex
  updateLibs                        text    html    latex
  variantExons                      text    html    latex
  variantSI                         text    html    latex
** building package indices ...
* DONE (oneChannelGUI)