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Package 207/319HostnameOS / ArchBUILDCHECKBUILD BIN
oligo 1.8.3
Benilton Carvalho
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/oligo
Last Changed Rev: 41241 / Revision: 42512
Last Changed Date: 2009-08-19 19:22:00 -0700 (Wed, 19 Aug 2009)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: oligo
Version: 1.8.3
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD build oligo
StartedAt: 2009-10-20 13:47:20 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 13:52:03 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 282.1 seconds
RetCode: 0
Status: OK
PackageFile: oligo_1.8.3.tar.gz
PackageFileSize: 696.2 KiB

Command output

* checking for file 'oligo/DESCRIPTION' ... OK
* preparing 'oligo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'oligo' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.4-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c baseProfile.c -o baseProfile.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.4-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c basecontent.c -o basecontent.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.4-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c rma2.c -o rma2.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.4-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c rma_background2.c -o rma_background2.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.4-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c rma_common.c -o rma_common.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.4-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c trimmed.c -o trimmed.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o oligo.so baseProfile.o basecontent.o rma2.o rma_background2.o rma_common.o trimmed.o -L/home/biocbuild/bbs-2.4-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'oligo'
     Formats: text html latex example 
  IntensityMatrix-methods           text    html    latex   example
  MAplot-methods                    text    html    latex
  basecontent                       text    html    latex   example
  basicRMA                          text    html    latex   example
  boxplot                           text    html    latex
  coordinates                       text    html    latex   example
  crlmm                             text    html    latex
  getContainer                      text    html    latex
  getCrlmmSummaries                 text    html    latex
  getNgsColorsInfo                  text    html    latex
  hist                              text    html    latex
  image                             text    html    latex
  justSNPRMA                        text    html    latex   example
  list.celfiles                     text    html    latex   example
  oligo-package                     text    html    latex
  plotM-methods                     text    html    latex
  read.celfiles                     text    html    latex   example
  read.xysfiles                     text    html    latex   example
  readSummaries                     text    html    latex
  rma                               text    html    latex   example
  sequenceDesignMatrix              text    html    latex   example
  snprma                            text    html    latex
** building package indices ...
* DONE (oligo)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'oligo_1.8.3.tar.gz'