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Package 207/319HostnameOS / ArchBUILDCHECKBUILD BIN
oligo 1.8.3
Benilton Carvalho
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/oligo
Last Changed Rev: 41241 / Revision: 42512
Last Changed Date: 2009-08-19 19:22:00 -0700 (Wed, 19 Aug 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: oligo
Version: 1.8.3
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build oligo
StartedAt: 2009-10-20 14:33:50 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:41:33 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 462.6 seconds
RetCode: 0
Status: OK
PackageFile: oligo_1.8.3.tar.gz
PackageFileSize: 935.4 KiB

Command output

* checking for file 'oligo/DESCRIPTION' ... OK
* preparing 'oligo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* Installing *source* package 'oligo' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -Ie:/biocbld/bbs-2.4-bioc/R/src/extra/zlib -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c baseProfile.c -o baseProfile.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -Ie:/biocbld/bbs-2.4-bioc/R/src/extra/zlib -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c basecontent.c -o basecontent.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -Ie:/biocbld/bbs-2.4-bioc/R/src/extra/zlib -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c rma2.c -o rma2.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -Ie:/biocbld/bbs-2.4-bioc/R/src/extra/zlib -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c rma_background2.c -o rma_background2.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -Ie:/biocbld/bbs-2.4-bioc/R/src/extra/zlib -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c rma_common.c -o rma_common.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -Ie:/biocbld/bbs-2.4-bioc/R/src/extra/zlib -DHAVE_ZLIB  -I"e:/biocbld/bbs-2.4-bioc/R/library/preprocessCore/include"     -O3 -Wall  -std=gnu99 -c trimmed.c -o trimmed.o
gcc -shared -s -o oligo.dll tmp.def baseProfile.o basecontent.o rma2.o rma_background2.o rma_common.o trimmed.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'oligo'
     Formats: text html latex example chm 
  IntensityMatrix-methods           text    html    latex   example chm
  MAplot-methods                    text    html    latex           chm
  basecontent                       text    html    latex   example chm
  basicRMA                          text    html    latex   example chm
  boxplot                           text    html    latex           chm
  coordinates                       text    html    latex   example chm
  crlmm                             text    html    latex           chm
  getContainer                      text    html    latex           chm
  getCrlmmSummaries                 text    html    latex           chm
  getNgsColorsInfo                  text    html    latex           chm
  hist                              text    html    latex           chm
  image                             text    html    latex           chm
  justSNPRMA                        text    html    latex   example chm
  list.celfiles                     text    html    latex   example chm
  oligo-package                     text    html    latex           chm
  plotM-methods                     text    html    latex           chm
  read.celfiles                     text    html    latex   example chm
  read.xysfiles                     text    html    latex   example chm
  readSummaries                     text    html    latex           chm
  rma                               text    html    latex   example chm
  sequenceDesignMatrix              text    html    latex   example chm
  snprma                            text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\oligo\chm\oligo.chm





Compile time: 0 minutes, 1 second

23	Topics

97	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\oligo\chm\oligo.chm, 36,560 bytes

Compression decreased file by 35,739 bytes.

** building package indices ...
** MD5 sums
* DONE (oligo)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'oligo_1.8.3.tar.gz'