nem 2.8.0
Christian Bender
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/nem | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/nem.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'nem/DESCRIPTION' ... OK
* this is package 'nem' version '2.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'nem' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'nem' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: class
Loading required package: grid
Attaching package: 'RBGL'
The following object(s) are masked from package:e1071 :
extractPath
** help
*** installing help indices
>>> Building/Updating help pages for package 'nem'
Formats: text html latex example chm
Note: removing empty section \seealso in file 'BFSlevel.Rd'
Note: removing empty section \seealso in file 'BFSlevel.Rd'
BFSlevel text html latex example chm
BoutrosRNAi2002 text html latex example chm
SCCgraph text html latex example chm
SahinRNAi2008 text html latex example chm
closest.transitive.greedy text html latex chm
enumerate.models text html latex example chm
generateNetwork text html latex example chm
getDensityMatrix text html latex chm
infer.edge.type text html latex example chm
Note: removing empty section \details in file 'internal.Rd'
Note: removing empty section \details in file 'internal.Rd'
internal text html latex chm
Note: removing empty section \note in file 'local.model.prior.Rd'
Note: removing empty section \references in file 'local.model.prior.Rd'
Note: removing empty section \note in file 'local.model.prior.Rd'
Note: removing empty section \references in file 'local.model.prior.Rd'
local.model.prior text html latex example chm
nem text html latex example chm
nem.bootstrap text html latex example chm
nem.calcSignificance text html latex example chm
nem.consensus text html latex example chm
nem.cont.preprocess text html latex example chm
nem.discretize text html latex example chm
nem.jackknife text html latex example chm
nemModelSelection text html latex example chm
network.AIC text html latex example chm
plot.nem text html latex chm
plotEffects text html latex example chm
prune.graph text html latex example chm
selectEGenes text html latex example chm
set.default.parameters text html latex example chm
sim.intervention text html latex example chm
Note: removing empty section \seealso in file 'subsets.Rd'
Note: removing empty section \seealso in file 'subsets.Rd'
subsets text html latex example chm
transitive.closure text html latex example chm
transitive.projections text html latex chm
transitive.reduction text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\NEM~1.RCH\00_PKG~1\nem\chm\nem.chm
Compile time: 0 minutes, 0 seconds
31 Topics
225 Local links
1 Internet link
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\NEM~1.RCH\00_PKG~1\nem\chm\nem.chm, 67,056 bytes
Compression decreased file by 82,053 bytes.
** building package indices ...
** MD5 sums
* DONE (nem)